LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
FAM95B1
hsa-miR-298
0.872
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000592053
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1081-1094
0.042
0
XLOC_011188
hsa-miR-298
0.871
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023322
Biotype: transcript isomorph
Gene id: XLOC_011188
Gene Name: XLOC_011188
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-226
0.027
0
7mer
66-90
0.015
3
RP11-80H5.9
hsa-miR-298
0.871
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449882
Biotype: lincRNA
Gene id: ENSG00000235100
Gene Name: RP11-80H5.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1030-1053
0.030
1
6mer
285-306
0.005
1
6mer
920-933
0.003
1
8mer+mismatch
913-933
0.003
1
MIR663AHG
hsa-miR-298
0.870
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000596111
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
12-28
0.021
2
7mer
318-339
0.021
0
RP11-753N8.1
hsa-miR-298
0.870
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549313
Biotype: lincRNA
Gene id: ENSG00000258183
Gene Name: RP11-753N8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-51
0.042
1
XLOC_000667
hsa-miR-298
0.870
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001367
Biotype: transcript isomorph
Gene id: XLOC_000667
Gene Name: XLOC_000667
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
171-182
0.003
0
6mer
1116-1127
0.003
0
6mer
136-147
0.003
0
6mer
31-42
0.003
0
6mer
101-112
0.003
0
6mer
66-77
0.003
0
6mer
1081-1092
0.002
0
6mer
276-287
0.002
0
6mer
241-265
0.002
0
6mer
801-825
0.002
0
6mer
416-427
0.002
0
6mer
731-742
0.002
0
6mer
836-860
0.002
Not Conserved
6mer
206-217
0.002
Not Conserved
6mer
591-602
0.002
0
6mer
1011-1022
0.002
Not Conserved
6mer
486-510
0.001
Not Conserved
6mer
381-392
0.001
Not Conserved
6mer
346-370
0.001
Not Conserved
6mer
696-707
0.001
Not Conserved
CTD-2529O21.2
hsa-miR-298
0.869
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570952
Biotype: antisense
Gene id: ENSG00000261978
Gene Name: CTD-2529O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-216
0.042
1
RP1-79C4.4
hsa-miR-298
0.869
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606154
Biotype: lincRNA
Gene id: ENSG00000271811
Gene Name: RP1-79C4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
914-931
0.042
9
LA16c-306A4.1
hsa-miR-298
0.869
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569106
Biotype: antisense
Gene id: ENSG00000260022
Gene Name: LA16c-306A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
347-366
0.026
1
6mer
207-224
0.016
1
XLOC_008963
hsa-miR-298
0.869
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018616
Biotype: transcript isomorph
Gene id: XLOC_008963
Gene Name: XLOC_008963
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
848-868
0.042
9
XLOC_014255
hsa-miR-298
0.868
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029603
Biotype: transcript isomorph
Gene id: XLOC_014255
Gene Name: XLOC_014255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-36
0.028
2
6mer
1246-1259
0.005
6
7mer
1696-1721
0.004
3
6mer
2271-2289
0.003
2
7mer
1708-1731
0.002
1
LINC00174
hsa-miR-298
0.868
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026873.1
Biotype: antisense
Gene id: NR_026873.1 (gene)
Gene Name: LINC00174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-298
0.016
1
7mer
4368-4394
0.010
0
7mer
3400-3423
0.007
1
8mer
3080-3104
0.004
0
8mer
1557-1577
0.003
0
7mer
3322-3344
0.003
1
XLOC_008259
hsa-miR-298
0.867
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017102
Biotype: transcript isomorph
Gene id: XLOC_008259
Gene Name: XLOC_008259
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
742-765
0.027
1
7mer
424-445
0.014
1
RP11-1006G14.2
hsa-miR-298
0.867
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565543
Biotype: lincRNA
Gene id: ENSG00000259783
Gene Name: RP11-1006G14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-269
0.041
0
RP11-553K8.5
hsa-miR-298
0.866
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566394
Biotype: antisense
Gene id: ENSG00000261573
Gene Name: RP11-553K8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-81
0.041
7
NPSR1-AS1
hsa-miR-298
0.866
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419766
Biotype: antisense
Gene id: ENSG00000197085
Gene Name: NPSR1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-370
0.031
0
6mer
3640-3665
0.004
2
6mer
1319-1334
0.003
1
6mer
1083-1105
0.002
Not Conserved
6mer
3607-3624
0.002
1
AC003958.2
hsa-miR-298
0.866
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000432258
Biotype: antisense
Gene id: ENSG00000234859
Gene Name: AC003958.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1355-1382
0.015
0
7mer
1008-1029
0.007
1
8mer
2808-2831
0.006
1
7mer
3640-3667
0.005
1
8mer
2049-2063
0.004
6
8mer
2855-2879
0.002
4
6mer
2140-2160
0.001
1
XLOC_014404
hsa-miR-298
0.866
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029929
Biotype: transcript isomorph
Gene id: XLOC_014404
Gene Name: XLOC_014404
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-257
0.027
1
6mer
747-769
0.005
3
6mer
1128-1155
0.004
5
6mer
3530-3551
0.003
1
6mer
2878-2902
0.002
1
PLCE1-AS2
hsa-miR-298
0.864
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000438899
Biotype: antisense
Gene id: ENSG00000232913
Gene Name: PLCE1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
477-501
0.028
1
8mer
784-801
0.013
1
ACTA2-AS1
hsa-miR-298
0.863
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000437930
Biotype: antisense
Gene id: ENSG00000180139
Gene Name: ACTA2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2407-2430
0.025
1
6mer
1922-1935
0.006
1
6mer
936-958
0.005
11
6mer
277-292
0.005
1
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