LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
XLOC_011686
hsa-miR-298
0.883
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024362
Biotype: transcript isomorph
Gene id: XLOC_011686
Gene Name: XLOC_011686
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-143
0.027
2
7mer
258-272
0.010
0
8mer
224-243
0.007
1
XLOC_001671
hsa-miR-298
0.883
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003872
Biotype: transcript isomorph
Gene id: XLOC_001671
Gene Name: XLOC_001671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10121-10146
0.017
0
7mer
8162-8188
0.010
0
7mer
5052-5076
0.006
0
7mer
10067-10093
0.005
Not Conserved
8mer
5110-5129
0.002
Not Conserved
6mer
7113-7134
0.002
Not Conserved
6mer
1043-1068
0.001
Not Conserved
6mer
5215-5235
0.001
Not Conserved
AC004947.2
hsa-miR-298
0.883
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430426
Biotype: lincRNA
Gene id: ENSG00000233760
Gene Name: AC004947.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
457-477
0.044
5
RP11-6C14.1
hsa-miR-298
0.882
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513718
Biotype: lincRNA
Gene id: ENSG00000250488
Gene Name: RP11-6C14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-38
0.044
1
XLOC_013936
hsa-miR-298
0.882
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029013
Biotype: transcript isomorph
Gene id: XLOC_013936
Gene Name: XLOC_013936
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
185-208
0.044
4
RP11-755F10.3
hsa-miR-298
0.881
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533576
Biotype: antisense
Gene id: ENSG00000254461
Gene Name: RP11-755F10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
494-514
0.035
8
8mer
317-337
0.007
1
6mer
287-312
0.001
1
TMPO-AS1
hsa-miR-298
0.881
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548760
Biotype: antisense
Gene id: ENSG00000257167
Gene Name: TMPO-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-435
0.019
2
8mer
425-438
0.016
1
7mer
853-874
0.004
Not Conserved
7mer
863-881
0.003
1
6mer
944-966
0.002
0
RP11-665J16.1
hsa-miR-298
0.881
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561647
Biotype: antisense
Gene id: ENSG00000261543
Gene Name: RP11-665J16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-162
0.043
1
FAM95B1
hsa-miR-298
0.880
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000455995
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-51
0.031
1
8mer
3614-3627
0.007
0
6mer
302-327
0.006
1
RP11-266J6.2
hsa-miR-298
0.879
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602768
Biotype: antisense
Gene id: ENSG00000269886
Gene Name: RP11-266J6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-207
0.043
9
FAM95B1
hsa-miR-298
0.879
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000620585
Biotype: retained_intron
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-52
0.031
1
8mer
3615-3628
0.007
0
6mer
303-328
0.006
1
CTD-2008P7.3
hsa-miR-298
0.879
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578466
Biotype: lincRNA
Gene id: ENSG00000264486
Gene Name: CTD-2008P7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-156
0.012
0
7mer
340-365
0.011
1
7mer
226-251
0.010
0
7mer
458-483
0.010
0
XLOC_013278
hsa-miR-298
0.878
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027248
Biotype: transcript isomorph
Gene id: XLOC_013278
Gene Name: XLOC_013278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1107-1134
0.019
0
6mer
1359-1384
0.014
0
6mer
750-768
0.010
0
LINC01002
hsa-miR-298
0.877
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614841
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
329-353
0.043
1
POT1-AS1
hsa-miR-298
0.877
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415715
Biotype: antisense
Gene id: ENSG00000224897
Gene Name: POT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-80
0.043
1
RP11-506N2.1
hsa-miR-298
0.876
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510941
Biotype: lincRNA
Gene id: ENSG00000251339
Gene Name: RP11-506N2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-111
0.043
0
RP11-77K12.9
hsa-miR-298
0.876
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621929
Biotype: lincRNA
Gene id: ENSG00000274220
Gene Name: RP11-77K12.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2244-2256
0.022
2
7mer
88-104
0.015
0
6mer
1983-1991
0.005
1
FAM95B1
hsa-miR-298
0.875
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000593216
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-367
0.043
0
LINC00588
hsa-miR-298
0.872
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521663
Biotype: lincRNA
Gene id: ENSG00000215117
Gene Name: LINC00588
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1395-1422
0.031
0
7mer
1599-1617
0.011
1
RP11-403N16.3
hsa-miR-298
0.872
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000565707
Biotype: lincRNA
Gene id: ENSG00000260564
Gene Name: RP11-403N16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2136-2154
0.042
8
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