LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
RP11-660L16.2
hsa-miR-28-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529369
Biotype: antisense
Gene id: ENSG00000254682
Gene Name: RP11-660L16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
473-493
0.017
1
6mer
532-547
0.005
1
6mer
544-566
0.004
0
RP11-423P10.2
hsa-miR-28-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606229
Biotype: sense_intronic
Gene id: ENSG00000272054
Gene Name: RP11-423P10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3117-3144
0.025
6
RP3-412A9.17
hsa-miR-28-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5711-5727
0.007
1
6mer
4221-4247
0.007
9
7mer
13344-13363
0.003
1
6mer
14290-14309
0.003
3
6mer
13742-13752
0.002
0
6mer
7010-7030
0.001
0
6mer
8381-8396
0.001
1
6mer
14901-14928
0.001
0
LINC00265
hsa-miR-28-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000340510
Biotype: lincRNA
Gene id: ENSG00000188185
Gene Name: LINC00265
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2896-2913
0.006
0
7mer
2375-2393
0.005
1
7mer
2725-2749
0.003
0
6mer
54-77
0.003
1
6mer
1684-1704
0.002
0
7mer
2161-2178
0.002
1
7mer
1878-1895
0.002
1
7mer
2030-2052
0.001
0
AC005355.2
hsa-miR-28-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515627
Biotype: lincRNA
Gene id: ENSG00000251169
Gene Name: AC005355.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
978-998
0.008
3
7mer
1044-1058
0.008
0
6mer
193-212
0.003
1
6mer
64-87
0.003
1
6mer
813-829
0.002
1
ATP11A-AS1
hsa-miR-28-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_109811.1
Biotype: antisense
Gene id: NR_109811.1 (gene)
Gene Name: ATP11A-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
966-972
0.019
1
7mer
207-226
0.005
1
RP11-76I23.7
hsa-miR-28-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000450908
Biotype: antisense
Gene id: ENSG00000231880
Gene Name: RP11-76I23.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-153
0.020
5
6mer
237-261
0.004
6
RP11-1114I9.1
hsa-miR-28-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519983
Biotype: lincRNA
Gene id: ENSG00000253659
Gene Name: RP11-1114I9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-357
0.021
3
6mer
73-98
0.004
1
RP11-345M22.2
hsa-miR-28-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567993
Biotype: lincRNA
Gene id: ENSG00000261390
Gene Name: RP11-345M22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-84
0.014
2
7mer
138-158
0.011
3
RP11-117D22.2
hsa-miR-28-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449958
Biotype: lincRNA
Gene id: ENSG00000230138
Gene Name: RP11-117D22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
816-837
0.025
0
KIAA1614-AS1
hsa-miR-28-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415647
Biotype: antisense
Gene id: ENSG00000232586
Gene Name: KIAA1614-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
768-788
0.010
2
7mer
1008-1014
0.005
1
6mer
376-396
0.005
1
6mer
63-87
0.005
0
TPTEP1
hsa-miR-28-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426585
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
631-648
0.016
0
6mer
1662-1670
0.002
0
7mer
1048-1071
0.002
Not Conserved
6mer
1401-1419
0.002
0
7mer
1090-1114
0.001
0
6mer
1725-1743
0.001
0
SOX2-OT
hsa-miR-28-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000485035
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-432
0.025
8
RP11-244O19.1
hsa-miR-28-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000567068
Biotype: sense_overlapping
Gene id: ENSG00000261534
Gene Name: RP11-244O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2584-2596
0.004
0
7mer
156-174
0.004
1
7mer
414-432
0.004
1
6mer
236-257
0.003
3
6mer
3653-3672
0.003
0
7mer
1641-1653
0.002
2
6mer
2058-2076
0.002
2
6mer
1554-1580
0.001
3
6mer
1461-1485
0.001
1
ASH1L-AS1
hsa-miR-28-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452809
Biotype: antisense
Gene id: ENSG00000235919
Gene Name: ASH1L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
768-782
0.019
3
6mer
138-158
0.005
5
LINC00937
hsa-miR-28-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536560
Biotype: lincRNA
Gene id: ENSG00000226091
Gene Name: LINC00937
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-73
0.019
2
6mer
73-99
0.005
0
RP11-706O15.7
hsa-miR-28-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000381105
Biotype: lincRNA
Gene id: ENSG00000205662
Gene Name: RP11-706O15.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
683-688
0.011
1
6mer
1627-1651
0.008
1
6mer
1611-1633
0.005
1
HCG18
hsa-miR-28-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454269
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2247-2270
0.014
1
7mer
1785-1805
0.005
0
6mer
1990-2004
0.004
1
6mer
1760-1777
0.002
Not Conserved
RP11-363E7.4
hsa-miR-28-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000563205
Biotype: sense_overlapping
Gene id: ENSG00000260912
Gene Name: RP11-363E7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1333-1355
0.025
3
TTTY15
hsa-miR-28-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
110-136
0.018
0
6mer
2626-2648
0.007
0
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