LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
CTB-113D17.1
hsa-miR-28-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609389
Biotype: antisense
Gene id: ENSG00000272568
Gene Name: CTB-113D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
625-643
0.023
2
6mer
2367-2386
0.002
1
RP11-1101K5.1
hsa-miR-28-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521904
Biotype: lincRNA
Gene id: ENSG00000253434
Gene Name: RP11-1101K5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-221
0.013
1
7mer
56-77
0.012
1
MCM3AP-AS1
hsa-miR-28-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000588753
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-125
0.016
4
7mer
125-139
0.006
1
6mer
173-195
0.004
1
XLOC_002674
hsa-miR-28-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006033
Biotype: transcript isomorph
Gene id: XLOC_002674
Gene Name: XLOC_002674
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-47
0.025
1
DLX6-AS1
hsa-miR-28-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452769
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3603-3619
0.008
1
6mer
183-200
0.007
5
6mer
619-637
0.003
0
6mer
668-689
0.003
2
6mer
3589-3607
0.002
0
6mer
1939-1962
0.002
1
6mer
1910-1914
0.001
3
CTB-96E2.3
hsa-miR-28-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591482
Biotype: processed_transcript
Gene id: ENSG00000258924
Gene Name: CTB-96E2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
255-262
0.025
6
LINC00598
hsa-miR-28-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_024506.1
Biotype: lincRNA
Gene id: NR_024506.1 (gene)
Gene Name: LINC00598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3155-3174
0.008
1
7mer
2045-2071
0.005
4
7mer
3385-3401
0.004
0
6mer
1051-1076
0.002
0
6mer
2770-2794
0.002
2
6mer
2832-2851
0.002
0
6mer
1137-1157
0.002
1
6mer
989-1004
0.001
2
RP11-214K3.24
hsa-miR-28-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621669
Biotype: lincRNA
Gene id: ENSG00000275389
Gene Name: RP11-214K3.24
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2295-2315
0.007
2
7mer
388-413
0.005
2
6mer
446-467
0.004
1
7mer
2027-2038
0.003
1
7mer
1763-1774
0.002
0
7mer
425-439
0.002
0
6mer
1928-1948
0.002
0
PROX1-AS1
hsa-miR-28-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451396
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
351-373
0.025
7
NR2F2-AS1
hsa-miR-28-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561344
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-231
0.009
1
7mer
567-584
0.009
1
8mer
509-531
0.007
4
MALAT1
hsa-miR-28-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4936-4952
0.012
8
6mer
8443-8461
0.005
1
6mer
5872-5891
0.004
7
8mer+mismatch
3900-3917
0.003
5
XLOC_003153
hsa-miR-28-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006528
Biotype: transcript isomorph
Gene id: XLOC_003153
Gene Name: XLOC_003153
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-122
0.025
1
FLJ23867
hsa-miR-28-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_026900.1
Biotype: sense
Gene id: NR_026900.1 (gene)
Gene Name: FLJ23867
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-328
0.007
1
8mer
248-267
0.006
1
7mer
130-147
0.005
1
7mer
1374-1380
0.003
2
7mer
892-911
0.002
0
6mer
1894-1909
0.002
1
LINC00907
hsa-miR-28-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586990
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
693-715
0.014
1
7mer
247-261
0.007
1
6mer
29-45
0.003
0
XLOC_006460
hsa-miR-28-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013820
Biotype: transcript isomorph
Gene id: XLOC_006460
Gene Name: XLOC_006460
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1324-1337
0.025
1
XLOC_014251
hsa-miR-28-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029427
Biotype: transcript isomorph
Gene id: XLOC_014251
Gene Name: XLOC_014251
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
272-286
0.010
7
7mer
1010-1030
0.008
0
6mer
131-158
0.006
4
6mer
531-547
0.001
0
LINC00950
hsa-miR-28-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024006.1
Biotype: lincRNA
Gene id: NR_024006.1 (gene)
Gene Name: LINC00950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4967-4981
0.005
5
6mer
343-365
0.005
2
6mer
4470-4492
0.004
3
6mer
3850-3876
0.002
3
7mer
3564-3587
0.002
0
6mer
1392-1413
0.002
2
6mer
1112-1130
0.002
0
6mer
835-858
0.002
0
6mer
1893-1914
0.001
1
CTD-2587H24.14
hsa-miR-28-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586923
Biotype: retained_intron
Gene id: ENSG00000276570
Gene Name: CTD-2587H24.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-22
0.016
4
7mer
1612-1639
0.003
1
8mer+wobble
2388-2411
0.002
1
7mer
1042-1065
0.002
Not Conserved
6mer
2479-2497
0.001
0
6mer
2312-2335
0.001
1
XLOC_006491
hsa-miR-28-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014334
Biotype: transcript isomorph
Gene id: XLOC_006491
Gene Name: XLOC_006491
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-105
0.025
1
RP11-111E14.1
hsa-miR-28-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558050
Biotype: antisense
Gene id: ENSG00000259351
Gene Name: RP11-111E14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
257-283
0.010
12
6mer
979-1000
0.005
0
6mer
838-859
0.005
1
6mer
810-831
0.004
1
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