LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
CTC-332L22.1
hsa-miR-28-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606424
Biotype: lincRNA
Gene id: ENSG00000271849
Gene Name: CTC-332L22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-399
0.026
4
RP11-702B10.2
hsa-miR-28-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000609911
Biotype: lincRNA
Gene id: ENSG00000273415
Gene Name: RP11-702B10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
734-753
0.015
1
7mer
441-466
0.010
1
LINC01079
hsa-miR-28-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000431171
Biotype: lincRNA
Gene id: ENSG00000229609
Gene Name: LINC01079
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-380
0.020
2
6mer
411-435
0.005
2
XLOC_003546
hsa-miR-28-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007535
Biotype: transcript isomorph
Gene id: XLOC_003546
Gene Name: XLOC_003546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
320-342
0.016
1
6mer
419-439
0.004
2
6mer
436-459
0.004
1
6mer
1370-1395
0.002
1
RP11-360K13.1
hsa-miR-28-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527528
Biotype: lincRNA
Gene id: ENSG00000254587
Gene Name: RP11-360K13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-280
0.019
1
6mer
1184-1205
0.006
3
MEG3
hsa-miR-28-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000524035
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
545-566
0.008
1
6mer
2414-2434
0.004
3
7mer
2725-2747
0.004
0
8mer
1586-1611
0.004
1
7mer
758-785
0.004
0
6mer
626-651
0.001
Not Conserved
ANO1-AS1
hsa-miR-28-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524987
Biotype: antisense
Gene id: ENSG00000254902
Gene Name: ANO1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
67-91
0.011
10
6mer
30-52
0.009
8
7mer
108-127
0.005
1
SOX2-OT
hsa-miR-28-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595287
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-154
0.025
8
SOX2-OT
hsa-miR-28-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600386
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-157
0.025
8
SOX2-OT
hsa-miR-28-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600801
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-157
0.025
8
DLX6-AS1
hsa-miR-28-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437331
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
90-107
0.007
5
9mer
3510-3526
0.007
1
6mer
526-544
0.004
0
6mer
575-596
0.004
2
6mer
1846-1869
0.002
1
6mer
3496-3514
0.002
0
6mer
1817-1821
0.001
3
XLOC_009208
hsa-miR-28-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019385
Biotype: transcript isomorph
Gene id: XLOC_009208
Gene Name: XLOC_009208
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-396
0.007
2
6mer
1288-1307
0.007
1
7mer
711-731
0.005
1
6mer
295-317
0.004
1
6mer
241-259
0.003
1
SOX2-OT
hsa-miR-28-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596250
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-157
0.025
8
RP11-774O3.1
hsa-miR-28-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503186
Biotype: lincRNA
Gene id: ENSG00000248986
Gene Name: RP11-774O3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-117
0.025
2
XLOC_000022
hsa-miR-28-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000807
Biotype: transcript isomorph
Gene id: XLOC_000022
Gene Name: XLOC_000022
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
606-632
0.010
1
6mer
246-267
0.004
0
6mer
3959-3983
0.004
1
6mer
1073-1096
0.004
1
6mer
360-379
0.003
0
6mer
1255-1279
0.001
1
AC073254.1
hsa-miR-28-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604677
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
255-277
0.025
1
XLOC_014271
hsa-miR-28-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029616
Biotype: transcript isomorph
Gene id: XLOC_014271
Gene Name: XLOC_014271
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2096-2107
0.007
0
8mer
182-198
0.006
0
7mer
1808-1832
0.005
0
6mer
1988-2008
0.003
0
6mer
220-236
0.002
0
6mer
485-501
0.002
0
RP3-402G11.27
hsa-miR-28-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610050
Biotype: antisense
Gene id: ENSG00000272836
Gene Name: RP3-402G11.27
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
326-345
0.025
1
AC009120.4
hsa-miR-28-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569389
Biotype: lincRNA
Gene id: ENSG00000261404
Gene Name: AC009120.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
497-513
0.019
2
6mer
699-722
0.004
2
6mer
689-712
0.003
1
AC012363.4
hsa-miR-28-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455707
Biotype: antisense
Gene id: ENSG00000224789
Gene Name: AC012363.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-113
0.025
3
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