LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
LINC01002
hsa-miR-28-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587051
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1357-1374
0.006
1
6mer
1548-1567
0.006
0
8mer
776-800
0.005
0
7mer
379-404
0.005
0
7mer
1262-1279
0.003
0
6mer
296-309
0.002
Not Conserved
XLOC_004366
hsa-miR-28-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9284-9303
0.011
1
7mer
11992-12008
0.009
1
7mer
1464-1484
0.003
1
6mer
3446-3458
0.002
1
6mer
2481-2506
0.001
1
6mer
2510-2528
0.001
0
RP11-280G9.1
hsa-miR-28-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505627
Biotype: lincRNA
Gene id: ENSG00000251127
Gene Name: RP11-280G9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1681-1704
0.013
2
7mer
2585-2597
0.009
0
6mer
769-787
0.005
2
RMDN2-AS1
hsa-miR-28-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601029
Biotype: antisense
Gene id: ENSG00000235848
Gene Name: RMDN2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
553-578
0.023
2
6mer
291-307
0.003
1
XLOC_002186
hsa-miR-28-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004321
Biotype: transcript isomorph
Gene id: XLOC_002186
Gene Name: XLOC_002186
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1675-1697
0.013
1
6mer
140-163
0.006
1
6mer
1342-1366
0.003
0
7mer
1223-1241
0.003
0
6mer
1200-1205
0.002
0
RP5-940J5.6
hsa-miR-28-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501075
Biotype: antisense
Gene id: ENSG00000247853
Gene Name: RP5-940J5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
904-926
0.017
5
7mer
986-1010
0.005
1
6mer
261-284
0.004
2
bP-2189O9.3
hsa-miR-28-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623794
Biotype: lincRNA
Gene id: ENSG00000279579
Gene Name: bP-2189O9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
500-524
0.013
0
6mer
294-317
0.012
0
XLOC_003870
hsa-miR-28-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00009022
Biotype: transcript isomorph
Gene id: XLOC_003870
Gene Name: XLOC_003870
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
369-389
0.026
1
XLOC_002560
hsa-miR-28-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005379
Biotype: transcript isomorph
Gene id: XLOC_002560
Gene Name: XLOC_002560
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2415-2437
0.012
1
6mer
2640-2657
0.006
1
6mer
718-742
0.004
1
6mer
1955-1973
0.004
0
RP4-798P15.3
hsa-miR-28-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000466953
Biotype: retained_intron
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2359-2380
0.015
6
6mer
109-131
0.008
6
6mer
3136-3163
0.003
9
LINC01233
hsa-miR-28-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601708
Biotype: lincRNA
Gene id: ENSG00000269364
Gene Name: LINC01233
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-217
0.026
0
XLOC_005681
hsa-miR-28-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012692
Biotype: transcript isomorph
Gene id: XLOC_005681
Gene Name: XLOC_005681
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
181-204
0.011
1
7mer
918-937
0.009
1
7mer
886-899
0.003
0
6mer
811-833
0.002
0
AC006547.13
hsa-miR-28-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608610
Biotype: antisense
Gene id: ENSG00000236540
Gene Name: AC006547.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
711-728
0.020
1
8mer
684-710
0.006
1
RP11-244B22.6
hsa-miR-28-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564059
Biotype: lincRNA
Gene id: ENSG00000261398
Gene Name: RP11-244B22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
415-437
0.015
0
6mer
982-1006
0.011
0
CTC-276P9.4
hsa-miR-28-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000620001
Biotype: antisense
Gene id: ENSG00000277619
Gene Name: CTC-276P9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1254-1274
0.010
3
6mer
242-268
0.008
6
6mer
612-632
0.004
3
6mer
970-993
0.004
2
AC004951.6
hsa-miR-28-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447643
Biotype: lincRNA
Gene id: ENSG00000228434
Gene Name: AC004951.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
445-470
0.026
0
RP1-267D11.6
hsa-miR-28-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611079
Biotype: antisense
Gene id: ENSG00000277283
Gene Name: RP1-267D11.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
840-861
0.026
2
XLOC_009788
hsa-miR-28-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020456
Biotype: transcript isomorph
Gene id: XLOC_009788
Gene Name: XLOC_009788
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3377-3393
0.015
6
6mer
4179-4183
0.004
0
6mer
1092-1107
0.003
1
7mer
1195-1215
0.003
0
6mer
3506-3510
0.001
2
AC004471.10
hsa-miR-28-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609936
Biotype: lincRNA
Gene id: ENSG00000272682
Gene Name: AC004471.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-159
0.008
2
7mer
950-977
0.006
7
6mer
86-102
0.003
0
6mer
65-90
0.003
1
6mer
1182-1205
0.003
1
8mer+mismatch
1030-1041
0.002
1
XLOC_008428
hsa-miR-28-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018149
Biotype: transcript isomorph
Gene id: XLOC_008428
Gene Name: XLOC_008428
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-156
0.020
1
6mer
600-616
0.005
4
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