LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
RP4-806M20.3
hsa-miR-28-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000601795
Biotype: lincRNA
Gene id: ENSG00000268333
Gene Name: RP4-806M20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1045-1065
0.026
0
XLOC_009544
hsa-miR-28-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019750
Biotype: transcript isomorph
Gene id: XLOC_009544
Gene Name: XLOC_009544
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
643-661
0.018
2
6mer
653-678
0.006
3
6mer
2448-2474
0.003
1
XLOC_013955
hsa-miR-28-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029036
Biotype: transcript isomorph
Gene id: XLOC_013955
Gene Name: XLOC_013955
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
928-948
0.013
2
6mer
256-273
0.006
Not Conserved
6mer
378-393
0.004
0
6mer
520-545
0.004
0
XLOC_010400
hsa-miR-28-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021797
Biotype: transcript isomorph
Gene id: XLOC_010400
Gene Name: XLOC_010400
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
31-41
0.026
1
XLOC_009662
hsa-miR-28-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021064
Biotype: transcript isomorph
Gene id: XLOC_009662
Gene Name: XLOC_009662
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-228
0.026
1
XLOC_006946
hsa-miR-28-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014878
Biotype: transcript isomorph
Gene id: XLOC_006946
Gene Name: XLOC_006946
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1272-1298
0.016
2
9mer
75-95
0.011
1
XLOC_010155
hsa-miR-28-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020873
Biotype: transcript isomorph
Gene id: XLOC_010155
Gene Name: XLOC_010155
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-56
0.026
2
LINC00649
hsa-miR-28-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000616030
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
548-565
0.016
2
8mer+mismatch
348-366
0.005
5
6mer
688-706
0.004
0
RP11-685G9.2
hsa-miR-28-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559539
Biotype: antisense
Gene id: ENSG00000259514
Gene Name: RP11-685G9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
520-536
0.020
11
6mer
48-64
0.004
2
6mer
171-189
0.003
0
RP5-1198O20.4
hsa-miR-28-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447959
Biotype: lincRNA
Gene id: ENSG00000230615
Gene Name: RP5-1198O20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
555-573
0.026
1
CAND1.11
hsa-miR-28-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_103765.1
Biotype: sense
Gene id: NR_103765.1 (gene)
Gene Name: CAND1.11
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
44-63
0.011
5
6mer
38-52
0.008
3
6mer
846-867
0.007
2
CTD-2383M3.1
hsa-miR-28-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501397
Biotype: antisense
Gene id: ENSG00000248027
Gene Name: CTD-2383M3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1698-1711
0.021
4
7mer
79-84
0.005
1
LINC01344
hsa-miR-28-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608183
Biotype: lincRNA
Gene id: ENSG00000228918
Gene Name: LINC01344
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-198
0.015
1
8mer+wobble
49-67
0.004
0
6mer
298-316
0.004
0
6mer
1485-1489
0.004
1
RP1-151F17.2
hsa-miR-28-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606924
Biotype: lincRNA
Gene id: ENSG00000272341
Gene Name: RP1-151F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
228-252
0.016
0
7mer
806-818
0.009
0
6mer
928-954
0.002
0
XLOC_014144
hsa-miR-28-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029501
Biotype: transcript isomorph
Gene id: XLOC_014144
Gene Name: XLOC_014144
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
256-273
0.014
3
7mer
1340-1365
0.009
1
6mer
673-689
0.003
1
NIFK-AS1
hsa-miR-28-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447668
Biotype: antisense
Gene id: ENSG00000236859
Gene Name: NIFK-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-147
0.009
1
6mer
1275-1294
0.006
1
6mer
484-504
0.005
1
9mer
560-586
0.004
0
6mer
135-154
0.003
1
XLOC_000162
hsa-miR-28-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000039
Biotype: transcript isomorph
Gene id: XLOC_000162
Gene Name: XLOC_000162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
722-740
0.008
0
6mer
256-274
0.007
1
6mer
489-506
0.005
1
6mer
1460-1483
0.005
0
XLOC_007098
hsa-miR-28-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014518
Biotype: transcript isomorph
Gene id: XLOC_007098
Gene Name: XLOC_007098
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1674-1697
0.013
2
7mer
2578-2590
0.009
0
6mer
762-780
0.005
2
AC006003.3
hsa-miR-28-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000448541
Biotype: sense_intronic
Gene id: ENSG00000231515
Gene Name: AC006003.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-38
0.026
2
LINC00649
hsa-miR-28-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000596365
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
529-546
0.021
2
8mer+mismatch
331-347
0.005
5
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