LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
LINC00294
hsa-miR-28-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_015451.1
Biotype: sense
Gene id: NR_015451.1 (gene)
Gene Name: LINC00294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2688-2708
0.018
1
6mer
265-283
0.004
1
6mer
2604-2625
0.003
1
6mer
1485-1509
0.001
1
CTB-129P6.4
hsa-miR-28-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585408
Biotype: antisense
Gene id: ENSG00000267282
Gene Name: CTB-129P6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-155
0.017
1
7mer
302-329
0.009
7
MIR4697HG
hsa-miR-28-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_024344.1
Biotype: lincRNA
Gene id: NR_024344.1 (gene)
Gene Name: MIR4697HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
70-88
0.014
7
8mer
3943-3967
0.004
1
6mer
4853-4875
0.003
4
7mer
3841-3866
0.002
1
6mer
1611-1630
0.001
4
6mer
3446-3456
0.001
0
6mer
1595-1608
0.001
2
AC104809.2
hsa-miR-28-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425110
Biotype: antisense
Gene id: ENSG00000223991
Gene Name: AC104809.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-300
0.008
1
8mer
2099-2118
0.007
1
6mer
1365-1383
0.005
6
6mer
2095-2118
0.002
0
6mer
1986-2012
0.002
1
6mer
1021-1039
0.002
0
6mer
976-1000
0.001
0
XLOC_013508
hsa-miR-28-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027834
Biotype: transcript isomorph
Gene id: XLOC_013508
Gene Name: XLOC_013508
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-146
0.022
1
7mer
389-409
0.004
Not Conserved
RP11-143E21.3
hsa-miR-28-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611525
Biotype: lincRNA
Gene id: ENSG00000276122
Gene Name: RP11-143E21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-477
0.015
0
7mer
1383-1409
0.006
0
6mer
377-400
0.004
1
6mer
803-821
0.002
0
PHEX-AS1
hsa-miR-28-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000424650
Biotype: antisense
Gene id: ENSG00000224204
Gene Name: PHEX-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1619-1642
0.022
1
6mer
891-912
0.004
3
PROX1-AS1
hsa-miR-28-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607258
Biotype: antisense
Gene id: ENSG00000272167
Gene Name: PROX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-469
0.022
Not Conserved
6mer
48-62
0.005
2
RP11-365O16.6
hsa-miR-28-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420350
Biotype: antisense
Gene id: ENSG00000237101
Gene Name: RP11-365O16.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
443-463
0.012
1
7mer
867-883
0.009
0
6mer
1134-1151
0.003
0
6mer
331-354
0.002
1
HNRNPUL2-BSCL2
hsa-miR-28-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037946.1
Biotype: sense
Gene id: NR_037946.1 (gene)
Gene Name: HNRNPUL2-BSCL2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
250-272
0.008
10
7mer
1053-1066
0.004
7
7mer
1149-1166
0.004
4
6mer
200-221
0.003
1
6mer
2846-2869
0.002
6
6mer
206-231
0.002
2
6mer
3929-3953
0.002
1
6mer
1184-1203
0.002
0
RP1-292B18.4
hsa-miR-28-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415477
Biotype: antisense
Gene id: ENSG00000223598
Gene Name: RP1-292B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-374
0.026
2
CTD-2636A23.2
hsa-miR-28-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000565748
Biotype: antisense
Gene id: ENSG00000261604
Gene Name: CTD-2636A23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1557-1580
0.026
3
MCM3AP-AS1
hsa-miR-28-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000414659
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-274
0.018
4
7mer
274-288
0.006
1
6mer
322-344
0.003
1
RP11-203B9.4
hsa-miR-28-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000586234
Biotype: antisense
Gene id: ENSG00000226803
Gene Name: RP11-203B9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
536-553
0.011
0
7mer
658-680
0.010
Not Conserved
6mer
35-51
0.006
2
XLOC_004924
hsa-miR-28-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11090-11107
0.011
1
7mer
8633-8649
0.005
4
6mer
3785-3803
0.003
5
6mer
3236-3254
0.002
1
6mer
2754-2776
0.002
0
6mer
3160-3164
0.001
2
6mer
9349-9372
0.001
1
6mer
2426-2449
0.001
1
SOX2-OT
hsa-miR-28-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460739
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
554-576
0.026
8
LINC00910
hsa-miR-28-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000341011
Biotype: lincRNA
Gene id: ENSG00000188825
Gene Name: LINC00910
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
589-607
0.009
0
7mer
1701-1718
0.005
1
7mer
2160-2172
0.005
0
6mer
308-333
0.004
0
6mer
1204-1227
0.002
0
6mer
1254-1278
0.001
0
HCG18
hsa-miR-28-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454129
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4260-4283
0.014
1
7mer
3656-3676
0.005
0
6mer
3861-3875
0.003
1
6mer
1870-1874
0.002
0
6mer
3631-3648
0.001
Not Conserved
6mer
2800-2821
0.001
0
Z83844.1
hsa-miR-28-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000456099
Biotype: antisense
Gene id: ENSG00000233360
Gene Name: Z83844.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1265-1284
0.009
9
8mer
757-778
0.008
4
6mer
1298-1320
0.004
7
6mer
1252-1272
0.003
6
6mer
1603-1624
0.002
0
AC073254.1
hsa-miR-28-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597193
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
317-339
0.022
1
6mer
515-530
0.004
0
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