LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
FAM95B1
hsa-miR-28-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000586842
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
155-179
0.027
0
XLOC_011509
hsa-miR-28-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023704
Biotype: transcript isomorph
Gene id: XLOC_011509
Gene Name: XLOC_011509
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
290-316
0.011
1
9mer
432-456
0.011
1
7mer
402-422
0.006
2
CTD-2620I22.3
hsa-miR-28-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596769
Biotype: lincRNA
Gene id: ENSG00000267943
Gene Name: CTD-2620I22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-77
0.013
0
8mer
644-661
0.005
0
6mer
1084-1106
0.005
1
6mer
656-668
0.003
1
SOX2-OT
hsa-miR-28-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600962
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-157
0.027
8
RP11-402G3.3
hsa-miR-28-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612244
Biotype: lincRNA
Gene id: ENSG00000230601
Gene Name: RP11-402G3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-74
0.021
3
6mer
577-598
0.006
2
SLC9A9-AS2
hsa-miR-28-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490153
Biotype: antisense
Gene id: ENSG00000244493
Gene Name: SLC9A9-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-139
0.020
2
6mer
227-251
0.007
6
XLOC_000508
hsa-miR-28-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001231
Biotype: transcript isomorph
Gene id: XLOC_000508
Gene Name: XLOC_000508
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1368-1381
0.027
1
LINC01031
hsa-miR-28-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420807
Biotype: lincRNA
Gene id: ENSG00000232077
Gene Name: LINC01031
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
632-645
0.027
1
LINC00598
hsa-miR-28-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_024507.1
Biotype: lincRNA
Gene id: NR_024507.1 (gene)
Gene Name: LINC00598
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3155-3172
0.009
1
7mer
2045-2071
0.005
4
7mer
3523-3539
0.004
0
6mer
1051-1076
0.002
0
6mer
2832-2851
0.002
0
6mer
2770-2794
0.002
2
6mer
1137-1157
0.002
1
6mer
989-1004
0.001
2
TTTY15
hsa-miR-28-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
77-103
0.019
0
6mer
2593-2615
0.008
0
XLOC_012588
hsa-miR-28-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025782
Biotype: transcript isomorph
Gene id: XLOC_012588
Gene Name: XLOC_012588
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1319-1338
0.008
2
8mer
749-769
0.007
Not Conserved
7mer
1334-1359
0.005
0
7mer
366-371
0.003
0
6mer
413-435
0.002
Not Conserved
6mer
976-980
0.002
Not Conserved
GATA6-AS1
hsa-miR-28-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584373
Biotype: lincRNA
Gene id: ENSG00000266010
Gene Name: GATA6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-91
0.027
5
XLOC_014159
hsa-miR-28-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029516
Biotype: transcript isomorph
Gene id: XLOC_014159
Gene Name: XLOC_014159
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
479-501
0.007
3
6mer
2319-2341
0.005
1
6mer
2357-2371
0.005
1
6mer
296-314
0.004
0
6mer
364-380
0.004
0
7mer
668-685
0.002
1
AC073254.1
hsa-miR-28-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617813
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
372-390
0.027
2
FAM95B1
hsa-miR-28-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000592053
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
309-333
0.024
0
6mer
1409-1430
0.003
Not Conserved
C12orf36
hsa-miR-28-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000318426
Biotype: lincRNA
Gene id: ENSG00000180861
Gene Name: C12orf36
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2053-2071
0.015
3
6mer
298-317
0.007
2
8mer
2270-2292
0.005
1
DGCR10
hsa-miR-28-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609839
Biotype: sense_intronic
Gene id: ENSG00000273164
Gene Name: DGCR10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
278-299
0.014
1
7mer
32-58
0.012
0
RP11-597D13.9
hsa-miR-28-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505532
Biotype: antisense
Gene id: ENSG00000248429
Gene Name: RP11-597D13.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1283-1307
0.008
0
6mer
2083-2103
0.008
2
6mer
34-55
0.007
4
6mer
1564-1589
0.003
1
RP11-320N21.1
hsa-miR-28-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501164
Biotype: antisense
Gene id: ENSG00000245080
Gene Name: RP11-320N21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
425-444
0.009
2
7mer
1639-1665
0.009
3
7mer
2518-2537
0.005
Not Conserved
6mer
504-526
0.002
1
6mer
1850-1876
0.002
1
RP13-631K18.2
hsa-miR-28-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531559
Biotype: lincRNA
Gene id: ENSG00000254486
Gene Name: RP13-631K18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2655-2674
0.017
1
8mer
1589-1598
0.006
0
6mer
2242-2266
0.004
1
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