LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
XLOC_006476
hsa-miR-28-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014317
Biotype: transcript isomorph
Gene id: XLOC_006476
Gene Name: XLOC_006476
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
264-283
0.008
0
6mer
194-210
0.007
0
6mer
46-63
0.004
Not Conserved
6mer
4-20
0.004
Not Conserved
6mer
88-107
0.004
Not Conserved
PAX8-AS1
hsa-miR-28-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609210
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
823-840
0.020
8
6mer
233-250
0.006
2
6mer
476-494
0.002
Not Conserved
HAND2-AS1
hsa-miR-28-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515310
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-143
0.027
9
RP5-955M13.4
hsa-miR-28-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000424566
Biotype: antisense
Gene id: ENSG00000232358
Gene Name: RP5-955M13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
653-675
0.027
13
GATA6-AS1
hsa-miR-28-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583490
Biotype: lincRNA
Gene id: ENSG00000266010
Gene Name: GATA6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-172
0.025
5
6mer
1124-1145
0.002
1
LINC00649
hsa-miR-28-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000594370
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
535-552
0.018
2
8mer+mismatch
337-353
0.006
5
6mer
675-693
0.003
0
XLOC_003050
hsa-miR-28-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006443
Biotype: transcript isomorph
Gene id: XLOC_003050
Gene Name: XLOC_003050
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
327-342
0.014
0
6mer
508-533
0.013
1
RP4-773N10.4
hsa-miR-28-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000554749
Biotype: antisense
Gene id: ENSG00000258634
Gene Name: RP4-773N10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3812-3835
0.008
2
6mer
269-294
0.006
1
6mer
3585-3602
0.004
2
6mer
1216-1220
0.003
0
6mer
586-612
0.002
1
6mer
1580-1592
0.002
Not Conserved
7mer
2407-2428
0.002
2
6mer
1875-1899
0.001
1
AC004549.6
hsa-miR-28-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441955
Biotype: antisense
Gene id: ENSG00000229893
Gene Name: AC004549.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-223
0.027
1
RP11-53M11.3
hsa-miR-28-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518787
Biotype: lincRNA
Gene id: ENSG00000254142
Gene Name: RP11-53M11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-166
0.023
1
6mer
495-518
0.005
1
RP11-415J8.3
hsa-miR-28-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000587696
Biotype: antisense
Gene id: ENSG00000225313
Gene Name: RP11-415J8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-322
0.020
1
6mer
510-536
0.004
3
6mer
610-630
0.002
1
6mer
572-591
0.001
1
AP001476.2
hsa-miR-28-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000451618
Biotype: lincRNA
Gene id: ENSG00000224413
Gene Name: AP001476.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1765-1771
0.019
1
6mer
1794-1820
0.008
1
FAM95B1
hsa-miR-28-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000610972
Biotype: lincRNA
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-334
0.024
0
6mer
1410-1431
0.003
Not Conserved
XLOC_001117
hsa-miR-28-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001741
Biotype: transcript isomorph
Gene id: XLOC_001117
Gene Name: XLOC_001117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-45
0.027
3
XLOC_013743
hsa-miR-28-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028388
Biotype: transcript isomorph
Gene id: XLOC_013743
Gene Name: XLOC_013743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1957-1979
0.010
7
6mer
1963-1987
0.007
2
6mer
270-289
0.005
5
6mer
430-453
0.005
2
AC105461.1
hsa-miR-28-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413841
Biotype: antisense
Gene id: ENSG00000227033
Gene Name: AC105461.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
299-323
0.014
10
8mer
189-195
0.013
1
LINC00649
hsa-miR-28-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000600155
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
943-960
0.017
2
8mer+mismatch
742-761
0.007
5
6mer
1083-1101
0.004
0
RP11-58A18.2
hsa-miR-28-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621177
Biotype: lincRNA
Gene id: ENSG00000274478
Gene Name: RP11-58A18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-86
0.022
1
6mer
89-112
0.005
0
XLOC_001333
hsa-miR-28-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004690
Biotype: transcript isomorph
Gene id: XLOC_001333
Gene Name: XLOC_001333
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
112-135
0.008
1
7mer
2809-2827
0.007
1
6mer
824-840
0.003
1
6mer
2306-2328
0.003
2
6mer
2129-2156
0.002
1
6mer
903-929
0.001
1
6mer
926-942
0.001
1
RP1-197B17.3
hsa-miR-28-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547799
Biotype: antisense
Gene id: ENSG00000257433
Gene Name: RP1-197B17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3013-3037
0.011
1
7mer
1380-1395
0.007
11
6mer
536-558
0.004
1
6mer
2214-2237
0.002
1
6mer
2354-2372
0.001
2
6mer
2275-2294
0.001
2
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