LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
XLOC_012843
hsa-miR-28-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026206
Biotype: transcript isomorph
Gene id: XLOC_012843
Gene Name: XLOC_012843
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
607-625
0.028
2
ERVH48-1
hsa-miR-28-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24-41
0.016
0
6mer
907-919
0.012
0
RP11-168L22.2
hsa-miR-28-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451438
Biotype: lincRNA
Gene id: ENSG00000224265
Gene Name: RP11-168L22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
268-278
0.028
1
AC025918.2
hsa-miR-28-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000452467
Biotype: antisense
Gene id: ENSG00000225798
Gene Name: AC025918.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-201
0.028
Not Conserved
CTD-2240J17.3
hsa-miR-28-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000612811
Biotype: lincRNA
Gene id: ENSG00000278448
Gene Name: CTD-2240J17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-84
0.028
4
LRRC37A5P
hsa-miR-28-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_034087.1
Biotype: lincRNA
Gene id: NR_034087.1 (gene)
Gene Name: LRRC37A5P
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
725-749
0.027
1
CTB-83J4.2
hsa-miR-28-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596330
Biotype: lincRNA
Gene id: ENSG00000269271
Gene Name: CTB-83J4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
674-694
0.020
1
6mer
223-249
0.007
0
RP11-73M18.7
hsa-miR-28-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602669
Biotype: sense_intronic
Gene id: ENSG00000269940
Gene Name: RP11-73M18.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
442-463
0.020
1
6mer
459-476
0.007
1
SOX2-OT
hsa-miR-28-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490005
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-158
0.027
8
NR2F2-AS1
hsa-miR-28-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558929
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-333
0.019
7
8mer
252-274
0.008
4
RP11-451B8.1
hsa-miR-28-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462792
Biotype: lincRNA
Gene id: ENSG00000239572
Gene Name: RP11-451B8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-283
0.014
1
7mer
485-508
0.012
1
6mer
407-426
0.002
0
RNF157-AS1
hsa-miR-28-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586661
Biotype: antisense
Gene id: ENSG00000267128
Gene Name: RNF157-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-39
0.024
2
6mer
48-63
0.003
0
HCG18
hsa-miR-28-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602516
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
398-419
0.012
1
6mer
35-60
0.009
2
6mer
333-349
0.005
1
6mer
1066-1083
0.001
Not Conserved
SOX2-OT
hsa-miR-28-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597651
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-157
0.027
8
XLOC_008522
hsa-miR-28-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018246
Biotype: transcript isomorph
Gene id: XLOC_008522
Gene Name: XLOC_008522
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
935-959
0.007
1
6mer
254-275
0.004
2
6mer
2959-2979
0.004
2
6mer
2619-2629
0.003
6
6mer
854-880
0.003
1
6mer
3014-3018
0.002
2
6mer
2975-2999
0.002
1
6mer
2995-3012
0.002
1
6mer
1693-1710
0.001
1
AP001610.5
hsa-miR-28-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000411427
Biotype: antisense
Gene id: ENSG00000228318
Gene Name: AP001610.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-597
0.018
4
8mer
87-112
0.010
1
FAM95B1
hsa-miR-28-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590254
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
155-179
0.027
0
SOX2-OT
hsa-miR-28-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598474
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-157
0.027
8
RP1-224A6.9
hsa-miR-28-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606754
Biotype: lincRNA
Gene id: ENSG00000271840
Gene Name: RP1-224A6.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
307-325
0.013
0
6mer
541-560
0.008
1
6mer
226-249
0.007
2
AC011290.4
hsa-miR-28-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439751
Biotype: antisense
Gene id: ENSG00000227172
Gene Name: AC011290.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-80
0.027
1
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