LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
SYNE1-AS1
hsa-miR-28-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412161
Biotype: antisense
Gene id: ENSG00000234577
Gene Name: SYNE1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
331-352
0.028
9
XLOC_002995
hsa-miR-28-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006375
Biotype: transcript isomorph
Gene id: XLOC_002995
Gene Name: XLOC_002995
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1090-1115
0.018
1
6mer
299-315
0.010
1
XLOC_008992
hsa-miR-28-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018641
Biotype: transcript isomorph
Gene id: XLOC_008992
Gene Name: XLOC_008992
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
734-756
0.021
2
6mer
1070-1088
0.005
1
6mer
945-958
0.003
0
RP11-258F1.1
hsa-miR-28-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583062
Biotype: antisense
Gene id: ENSG00000266677
Gene Name: RP11-258F1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2104-2127
0.012
12
6mer
1864-1881
0.008
9
6mer
1881-1905
0.008
6
FOXN3-AS2
hsa-miR-28-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554071
Biotype: antisense
Gene id: ENSG00000259073
Gene Name: FOXN3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
537-557
0.014
5
6mer
97-113
0.010
5
6mer
166-188
0.004
2
XLOC_006073
hsa-miR-28-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014122
Biotype: transcript isomorph
Gene id: XLOC_006073
Gene Name: XLOC_006073
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
856-871
0.016
1
7mer
679-699
0.009
1
6mer
92-106
0.003
Not Conserved
RP4-647J21.1
hsa-miR-28-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000568457
Biotype: sense_overlapping
Gene id: ENSG00000260997
Gene Name: RP4-647J21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1817-1834
0.019
0
6mer
1765-1780
0.005
1
6mer
1543-1560
0.004
2
RP11-202D1.2
hsa-miR-28-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000565170
Biotype: lincRNA
Gene id: ENSG00000260433
Gene Name: RP11-202D1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
608-626
0.028
2
RP11-85B7.2
hsa-miR-28-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574307
Biotype: antisense
Gene id: ENSG00000262966
Gene Name: RP11-85B7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4401-4421
0.010
0
8mer
2595-2613
0.004
0
6mer
5293-5315
0.004
1
6mer
507-523
0.004
1
6mer
4624-4638
0.003
1
6mer
4820-4844
0.002
0
6mer
2822-2846
0.001
1
XLOC_012007
hsa-miR-28-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024727
Biotype: transcript isomorph
Gene id: XLOC_012007
Gene Name: XLOC_012007
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
639-655
0.015
2
6mer
1068-1072
0.005
4
6mer
37-47
0.005
1
6mer
841-864
0.002
2
6mer
831-854
0.001
1
RP11-575L7.4
hsa-miR-28-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421734
Biotype: antisense
Gene id: ENSG00000231616
Gene Name: RP11-575L7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
296-317
0.015
4
9mer
761-779
0.013
2
AC061992.2
hsa-miR-28-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586321
Biotype: lincRNA
Gene id: ENSG00000267737
Gene Name: AC061992.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-626
0.017
3
8mer+wobble
669-691
0.007
5
6mer
448-466
0.003
1
XLOC_007895
hsa-miR-28-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016506
Biotype: transcript isomorph
Gene id: XLOC_007895
Gene Name: XLOC_007895
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5150-5175
0.005
4
6mer
9764-9778
0.003
1
6mer
9768-9790
0.003
1
8mer
3183-3205
0.003
1
8mer+wobble
3331-3347
0.002
0
7mer
729-750
0.002
0
6mer
4019-4043
0.001
3
6mer
3681-3694
0.001
1
6mer
6784-6804
0.001
1
6mer
2874-2896
0.001
0
6mer
1522-1540
0.001
Not Conserved
6mer
5935-5958
0.001
0
6mer
4442-4465
0.001
Not Conserved
6mer
4763-4781
0.001
0
6mer
5787-5810
0.001
Not Conserved
6mer
4696-4720
0.001
0
6mer
6662-6680
0.000
1
6mer
4692-4705
0.000
1
CH17-262A2.1
hsa-miR-28-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000618815
Biotype: sense_intronic
Gene id: ENSG00000275426
Gene Name: CH17-262A2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-302
0.028
1
FAM95B1
hsa-miR-28-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000586172
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
155-179
0.028
0
RP11-214O1.1
hsa-miR-28-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571192
Biotype: lincRNA
Gene id: ENSG00000262786
Gene Name: RP11-214O1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
933-951
0.007
0
6mer
66-86
0.006
Not Conserved
8mer
1653-1674
0.005
1
6mer
627-642
0.003
0
7mer
1438-1451
0.002
Not Conserved
6mer
1128-1142
0.002
0
6mer
915-937
0.002
1
RP11-89N17.1
hsa-miR-28-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000311067
Biotype: lincRNA
Gene id: ENSG00000173862
Gene Name: RP11-89N17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
441-458
0.013
4
6mer
245-259
0.005
3
6mer
318-335
0.005
5
6mer
318-329
0.003
1
6mer
497-509
0.002
1
RP11-809N8.2
hsa-miR-28-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000544674
Biotype: antisense
Gene id: ENSG00000256928
Gene Name: RP11-809N8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
677-682
0.017
2
6mer
129-153
0.006
5
6mer
364-386
0.004
0
GS1-124K5.11
hsa-miR-28-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000449307
Biotype: lincRNA
Gene id: ENSG00000229180
Gene Name: GS1-124K5.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5974-5989
0.007
1
6mer
6901-6911
0.004
Not Conserved
7mer
3203-3219
0.003
0
7mer
3915-3929
0.003
0
6mer
2671-2695
0.002
0
6mer
4549-4559
0.002
1
6mer
3622-3648
0.002
0
6mer
4162-4186
0.001
0
6mer
5381-5400
0.001
0
6mer
3177-3181
0.001
0
6mer
3537-3561
0.001
0
6mer
3545-3559
0.001
0
RP4-798P15.3
hsa-miR-28-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000354921
Biotype: processed_transcript
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2359-2380
0.016
6
6mer
112-134
0.008
6
6mer
3136-3163
0.003
9
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