LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010514
hsa-miR-28-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021918
Biotype: transcript isomorph
Gene id: XLOC_010514
Gene Name: XLOC_010514
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
892-910
0.018
0
7mer
731-750
0.011
1
RP11-503N18.1
hsa-miR-28-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000382849
Biotype: lincRNA
Gene id: ENSG00000206113
Gene Name: RP11-503N18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2132-2152
0.005
0
7mer
1838-1861
0.004
1
6mer
632-656
0.004
2
7mer
2342-2360
0.004
1
7mer
701-723
0.003
1
6mer
2342-2366
0.002
1
6mer
2231-2250
0.002
0
6mer
275-297
0.002
1
6mer
2385-2410
0.002
0
RP1-69M21.2
hsa-miR-28-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453135
Biotype: lincRNA
Gene id: ENSG00000235643
Gene Name: RP1-69M21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1006-1026
0.018
0
7mer
1191-1208
0.011
0
AC013733.3
hsa-miR-28-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000440371
Biotype: antisense
Gene id: ENSG00000234595
Gene Name: AC013733.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
576-597
0.007
1
6mer
468-490
0.006
1
6mer
560-580
0.006
1
6mer
506-510
0.005
1
6mer
527-547
0.005
1
CH17-140K24.1
hsa-miR-28-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000624102
Biotype: lincRNA
Gene id: ENSG00000279558
Gene Name: CH17-140K24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9-32
0.028
0
AL109763.1
hsa-miR-28-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000455391
Biotype: sense_overlapping
Gene id: ENSG00000228708
Gene Name: AL109763.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-340
0.020
2
6mer
187-206
0.008
3
MIR4435-1HG
hsa-miR-28-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609220
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-315
0.014
2
7mer
833-845
0.014
1
TSIX
hsa-miR-28-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
31351-31376
0.004
4
7mer
33151-33169
0.004
0
6mer
36383-36396
0.003
1
6mer
6017-6036
0.003
2
6mer
4117-4140
0.002
0
6mer
34122-34144
0.002
5
6mer
3672-3690
0.002
0
6mer
26768-26794
0.002
1
6mer
25833-25855
0.001
0
8mer+wobble
9466-9482
0.001
1
6mer
24458-24482
0.001
0
6mer
6150-6176
0.001
1
6mer
21615-21636
0.001
0
8mer+wobble
17027-17043
0.001
0
XLOC_001195
hsa-miR-28-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001810
Biotype: transcript isomorph
Gene id: XLOC_001195
Gene Name: XLOC_001195
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9108-9126
0.008
0
6mer
327-349
0.004
3
6mer
800-827
0.003
1
6mer
6070-6088
0.002
1
6mer
4432-4443
0.002
2
6mer
2778-2794
0.002
1
6mer
3834-3860
0.002
1
6mer
1358-1383
0.001
1
6mer
3722-3745
0.001
1
6mer
3035-3055
0.001
1
6mer
4287-4310
0.001
2
6mer
2334-2351
0.001
0
7mer
3688-3706
0.001
0
LINC00222
hsa-miR-28-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000416104
Biotype: lincRNA
Gene id: ENSG00000203801
Gene Name: LINC00222
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1400-1426
0.022
1
6mer
1285-1304
0.004
4
6mer
523-537
0.003
1
XLOC_009941
hsa-miR-28-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020639
Biotype: transcript isomorph
Gene id: XLOC_009941
Gene Name: XLOC_009941
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-351
0.028
1
CTD-2130F23.2
hsa-miR-28-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503870
Biotype: lincRNA
Gene id: ENSG00000251518
Gene Name: CTD-2130F23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-366
0.023
1
6mer
252-268
0.006
1
NAV2-AS5
hsa-miR-28-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528726
Biotype: antisense
Gene id: ENSG00000255043
Gene Name: NAV2-AS5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2855-2880
0.017
0
6mer
2330-2344
0.004
2
6mer
2823-2838
0.004
1
6mer
2680-2697
0.004
0
CASC2
hsa-miR-28-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_026941.1
Biotype: lincRNA
Gene id: NR_026941.1 (gene)
Gene Name: CASC2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
29-54
0.012
7
6mer
2333-2358
0.010
5
6mer
2060-2074
0.006
3
RP11-440D17.3
hsa-miR-28-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609975
Biotype: lincRNA
Gene id: ENSG00000272913
Gene Name: RP11-440D17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1069-1092
0.013
0
6mer
1192-1214
0.006
1
6mer
103-119
0.005
Not Conserved
6mer
417-432
0.002
0
7mer
677-690
0.002
0
AC010731.3
hsa-miR-28-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415029
Biotype: antisense
Gene id: ENSG00000231653
Gene Name: AC010731.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-435
0.028
2
XLOC_002909
hsa-miR-28-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005388
Biotype: transcript isomorph
Gene id: XLOC_002909
Gene Name: XLOC_002909
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-141
0.015
3
6mer
3155-3172
0.008
4
6mer
2029-2056
0.003
4
7mer
2116-2132
0.002
0
LINC00664
hsa-miR-28-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596718
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2429-2456
0.013
1
6mer
2145-2165
0.004
0
6mer
2356-2381
0.003
0
6mer
2002-2029
0.003
1
6mer
1856-1874
0.002
0
6mer
1195-1218
0.002
Not Conserved
RP11-138B4.1
hsa-miR-28-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511385
Biotype: lincRNA
Gene id: ENSG00000250658
Gene Name: RP11-138B4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-165
0.024
1
6mer
1829-1846
0.004
2
LINC01330
hsa-miR-28-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481578
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-141
0.015
3
6mer
2236-2253
0.007
4
6mer
1110-1137
0.003
4
7mer
1197-1213
0.002
0
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