LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000291
hsa-miR-28-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001024
Biotype: transcript isomorph
Gene id: XLOC_000291
Gene Name: XLOC_000291
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-346
0.023
1
6mer
487-499
0.007
2
XLOC_010191
hsa-miR-28-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020911
Biotype: transcript isomorph
Gene id: XLOC_010191
Gene Name: XLOC_010191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
233-255
0.016
0
6mer
116-134
0.013
0
RP11-631M21.1
hsa-miR-28-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562162
Biotype: lincRNA
Gene id: ENSG00000260370
Gene Name: RP11-631M21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
291-314
0.029
0
CTD-2076M15.1
hsa-miR-28-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000561587
Biotype: lincRNA
Gene id: ENSG00000260683
Gene Name: CTD-2076M15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
1137-1155
0.016
1
6mer
787-806
0.013
1
C21orf90
hsa-miR-28-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000354333
Biotype: antisense
Gene id: ENSG00000182912
Gene Name: C21orf90
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
374-396
0.015
0
6mer
190-205
0.005
1
6mer
943-968
0.003
1
6mer
1109-1135
0.003
1
6mer
2151-2173
0.002
0
6mer
1125-1146
0.001
0
LINC00964
hsa-miR-28-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027321.1
Biotype: lincRNA
Gene id: NR_027321.1 (gene)
Gene Name: LINC00964
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3318-3342
0.016
1
7mer
1369-1389
0.007
3
7mer
1573-1587
0.006
5
LINC00964
hsa-miR-28-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000510897
Biotype: lincRNA
Gene id: ENSG00000249816
Gene Name: LINC00964
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3271-3295
0.016
1
7mer
1322-1342
0.007
3
7mer
1526-1540
0.006
5
XLOC_003061
hsa-miR-28-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007127
Biotype: transcript isomorph
Gene id: XLOC_003061
Gene Name: XLOC_003061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
654-678
0.007
2
8mer
1879-1894
0.006
0
8mer
2077-2102
0.006
1
6mer
1069-1089
0.003
1
7mer
2208-2231
0.002
Not Conserved
6mer
5471-5488
0.002
2
6mer
4075-4095
0.002
0
6mer
2619-2640
0.001
2
FAM95B1
hsa-miR-28-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585417
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
155-179
0.029
0
LINC00456
hsa-miR-28-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000453862
Biotype: lincRNA
Gene id: ENSG00000233124
Gene Name: LINC00456
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-105
0.029
4
FAM66C
hsa-miR-28-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000438689
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
274-285
0.029
0
XLOC_006414
hsa-miR-28-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013157
Biotype: transcript isomorph
Gene id: XLOC_006414
Gene Name: XLOC_006414
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-76
0.029
1
RP11-546O6.4
hsa-miR-28-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000562653
Biotype: lincRNA
Gene id: ENSG00000260677
Gene Name: RP11-546O6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-85
0.029
0
RP11-24C3.2
hsa-miR-28-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000438872
Biotype: antisense
Gene id: ENSG00000244380
Gene Name: RP11-24C3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-254
0.015
5
6mer
94-112
0.008
7
6mer
222-240
0.006
4
RP11-350N15.6
hsa-miR-28-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606593
Biotype: antisense
Gene id: ENSG00000272159
Gene Name: RP11-350N15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-240
0.019
7
6mer
638-661
0.006
1
8mer+mismatch
245-261
0.004
1
CTB-31N19.3
hsa-miR-28-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564271
Biotype: sense_intronic
Gene id: ENSG00000261596
Gene Name: CTB-31N19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-259
0.029
4
RP11-126K1.9
hsa-miR-28-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609583
Biotype: lincRNA
Gene id: ENSG00000273481
Gene Name: RP11-126K1.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-217
0.029
0
RP11-561I11.3
hsa-miR-28-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421878
Biotype: antisense
Gene id: ENSG00000224525
Gene Name: RP11-561I11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-196
0.029
1
RP11-579E24.2
hsa-miR-28-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522857
Biotype: lincRNA
Gene id: ENSG00000253762
Gene Name: RP11-579E24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
298-317
0.015
0
7mer
41-61
0.014
3
PCAT19
hsa-miR-28-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2427-2444
0.029
1
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