LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
RP11-90P13.1
hsa-miR-28-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000567533
Biotype: lincRNA
Gene id: ENSG00000261795
Gene Name: RP11-90P13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-423
0.021
0
7mer
965-982
0.006
1
6mer
2860-2878
0.003
0
RP11-64C12.4
hsa-miR-28-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592203
Biotype: lincRNA
Gene id: ENSG00000267643
Gene Name: RP11-64C12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-347
0.016
0
6mer
93-118
0.007
0
6mer
186-207
0.006
0
RP11-856M7.4
hsa-miR-28-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579413
Biotype: lincRNA
Gene id: ENSG00000264072
Gene Name: RP11-856M7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-99
0.016
0
6mer
305-330
0.007
0
6mer
216-237
0.006
0
LOC100507387
hsa-miR-28-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_038402.1
Biotype: sense
Gene id: NR_038402.1 (gene)
Gene Name: LOC100507387
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
685-703
0.018
1
6mer
700-718
0.008
1
6mer
168-188
0.003
Not Conserved
RP11-554D14.6
hsa-miR-28-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551629
Biotype: lincRNA
Gene id: ENSG00000257398
Gene Name: RP11-554D14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
79-97
0.016
0
6mer
196-218
0.013
0
RP11-114H20.1
hsa-miR-28-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375644
Biotype: lincRNA
Gene id: ENSG00000182776
Gene Name: RP11-114H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2264-2284
0.020
2
7mer
793-814
0.008
2
6mer
894-912
0.002
0
AP005530.2
hsa-miR-28-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000572608
Biotype: lincRNA
Gene id: ENSG00000263305
Gene Name: AP005530.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
511-534
0.029
0
NR2F2-AS1
hsa-miR-28-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560170
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-254
0.020
7
8mer
173-195
0.009
4
RP11-613C6.2
hsa-miR-28-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000512720
Biotype: antisense
Gene id: ENSG00000250751
Gene Name: RP11-613C6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
270-287
0.018
9
7mer
276-303
0.007
7
6mer
323-348
0.004
5
RP11-430C7.5
hsa-miR-28-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444037
Biotype: lincRNA
Gene id: ENSG00000240219
Gene Name: RP11-430C7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
739-758
0.010
0
7mer
1843-1868
0.008
3
6mer
1557-1582
0.004
1
7mer
1331-1345
0.003
1
6mer
1164-1182
0.003
2
7mer
1352-1368
0.002
0
LINC00649
hsa-miR-28-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000594752
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-341
0.019
2
8mer+mismatch
126-142
0.007
5
6mer
464-482
0.004
0
GFOD1-AS1
hsa-miR-28-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000446001
Biotype: antisense
Gene id: ENSG00000237786
Gene Name: GFOD1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-251
0.020
12
6mer
218-240
0.009
9
RP4-735C1.4
hsa-miR-28-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431955
Biotype: antisense
Gene id: ENSG00000241720
Gene Name: RP4-735C1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
626-646
0.023
1
6mer
83-101
0.003
0
6mer
284-301
0.003
0
RP11-656D10.5
hsa-miR-28-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453437
Biotype: antisense
Gene id: ENSG00000227278
Gene Name: RP11-656D10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-245
0.029
5
XLOC_002997
hsa-miR-28-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006381
Biotype: transcript isomorph
Gene id: XLOC_002997
Gene Name: XLOC_002997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
294-321
0.005
Not Conserved
7mer
502-528
0.003
0
6mer
1852-1863
0.002
2
6mer
1795-1818
0.002
1
6mer
1717-1728
0.002
Not Conserved
6mer
1551-1562
0.002
1
6mer
1494-1517
0.001
1
6mer
1584-1607
0.001
0
6mer
1750-1773
0.001
Not Conserved
6mer
1629-1652
0.001
0
6mer
1120-1131
0.001
0
6mer
1236-1247
0.001
1
6mer
1402-1427
0.001
0
6mer
1461-1472
0.001
Not Conserved
6mer
1326-1337
0.001
0
6mer
1359-1382
0.001
0
6mer
1165-1176
0.001
0
6mer
1269-1292
0.001
Not Conserved
XLOC_010261
hsa-miR-28-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020997
Biotype: transcript isomorph
Gene id: XLOC_010261
Gene Name: XLOC_010261
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-173
0.015
1
6mer
395-417
0.014
2
RP11-210M15.2
hsa-miR-28-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559008
Biotype: lincRNA
Gene id: ENSG00000259495
Gene Name: RP11-210M15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6359-6377
0.006
6
6mer
6626-6648
0.006
4
6mer
6748-6774
0.006
2
7mer
6216-6234
0.004
1
7mer
1091-1112
0.004
0
6mer
5435-5453
0.002
1
6mer
3625-3641
0.001
0
RP5-1160K1.8
hsa-miR-28-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000526411
Biotype: antisense
Gene id: ENSG00000254942
Gene Name: RP5-1160K1.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-29
0.022
4
9mer
325-347
0.007
3
HCG18
hsa-miR-28-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449544
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4118-4141
0.015
1
7mer
3656-3676
0.005
0
6mer
3861-3875
0.004
1
6mer
1870-1874
0.002
0
6mer
3631-3648
0.002
Not Conserved
6mer
2800-2821
0.001
0
AC007743.1
hsa-miR-28-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447423
Biotype: antisense
Gene id: ENSG00000233251
Gene Name: AC007743.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1484-1501
0.013
7
7mer
1460-1477
0.011
9
6mer
1480-1501
0.005
7
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