LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
GJA9-MYCBP
hsa-miR-28-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037635.1
Biotype: sense
Gene id: NR_037635.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-127
0.030
2
XLOC_008618
hsa-miR-28-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017678
Biotype: transcript isomorph
Gene id: XLOC_008618
Gene Name: XLOC_008618
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-102
0.008
1
8mer
1061-1086
0.006
2
7mer
292-316
0.006
2
6mer
516-531
0.004
1
6mer
2727-2750
0.002
1
6mer
932-952
0.002
2
6mer
1987-2003
0.002
1
LOC100506124
hsa-miR-28-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_045375.1
Biotype: sense
Gene id: NR_045375.1 (gene)
Gene Name: LOC100506124
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1187-1212
0.021
1
7mer
831-846
0.006
1
6mer
1041-1061
0.003
0
XLOC_010290
hsa-miR-28-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
308-332
0.017
0
6mer
758-777
0.013
0
FAM224A
hsa-miR-28-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_002161.1
Biotype: lincRNA
Gene id: NR_002161.1 (gene)
Gene Name: FAM224A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
148-174
0.020
0
6mer
200-226
0.010
0
GJA9-MYCBP
hsa-miR-28-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037637.1
Biotype: sense
Gene id: NR_037637.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-127
0.030
2
RP11-90B9.3
hsa-miR-28-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616598
Biotype: antisense
Gene id: ENSG00000273747
Gene Name: RP11-90B9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
324-346
0.030
3
LINC00649
hsa-miR-28-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000620580
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
618-635
0.017
2
8mer+mismatch
416-436
0.006
5
6mer
758-776
0.004
0
8mer
206-226
0.003
0
C12orf36
hsa-miR-28-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000527705
Biotype: lincRNA
Gene id: ENSG00000180861
Gene Name: C12orf36
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-146
0.024
3
8mer
345-367
0.005
1
RP11-459O1.2
hsa-miR-28-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429137
Biotype: lincRNA
Gene id: ENSG00000234426
Gene Name: RP11-459O1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-78
0.030
1
XLOC_002100
hsa-miR-28-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002752
Biotype: transcript isomorph
Gene id: XLOC_002100
Gene Name: XLOC_002100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3107-3119
0.015
0
6mer
3263-3282
0.006
2
6mer
3157-3177
0.004
1
6mer
3084-3099
0.003
1
6mer
2970-2987
0.002
0
XLOC_003235
hsa-miR-28-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006634
Biotype: transcript isomorph
Gene id: XLOC_003235
Gene Name: XLOC_003235
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
2773-2791
0.006
1
7mer
656-672
0.005
0
7mer
1332-1356
0.004
1
6mer
6306-6323
0.004
1
6mer
5970-5997
0.003
1
7mer
4672-4695
0.002
1
6mer
4133-4156
0.002
1
6mer
3411-3434
0.002
1
6mer
3835-3850
0.001
0
6mer
4003-4018
0.001
Not Conserved
6mer
4650-4675
0.000
Not Conserved
XLOC_008033
hsa-miR-28-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017441
Biotype: transcript isomorph
Gene id: XLOC_008033
Gene Name: XLOC_008033
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
145-171
0.017
0
6mer
656-682
0.008
1
6mer
3076-3097
0.004
0
GJA9-MYCBP
hsa-miR-28-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037636.1
Biotype: sense
Gene id: NR_037636.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-127
0.030
2
RP11-798K3.3
hsa-miR-28-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558436
Biotype: lincRNA
Gene id: ENSG00000259289
Gene Name: RP11-798K3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-139
0.012
1
9mer
255-279
0.009
1
7mer
225-245
0.004
2
6mer
673-696
0.004
1
RP11-397A16.3
hsa-miR-28-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
402-428
0.015
1
6mer
1557-1584
0.010
1
6mer
806-833
0.005
0
AC079776.3
hsa-miR-28-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450840
Biotype: lincRNA
Gene id: ENSG00000237574
Gene Name: AC079776.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1494-1516
0.017
1
6mer
29-48
0.005
1
7mer
152-166
0.004
0
6mer
400-418
0.003
0
XLOC_011537
hsa-miR-28-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023745
Biotype: transcript isomorph
Gene id: XLOC_011537
Gene Name: XLOC_011537
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-184
0.022
1
6mer
79-105
0.004
0
6mer
313-334
0.004
0
PROX1-AS1
hsa-miR-28-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000601744
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
656-678
0.025
7
6mer
378-394
0.005
1
RP4-798P15.3
hsa-miR-28-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000464428
Biotype: retained_intron
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2356-2377
0.013
6
6mer
109-131
0.008
6
6mer
5495-5513
0.006
6
6mer
3133-3160
0.003
9
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