LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
TTTY10
hsa-miR-28-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1330-1340
0.030
0
MROH7-TTC4
hsa-miR-28-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037639.1
Biotype: sense
Gene id: NR_037639.1 (gene)
Gene Name: MROH7-TTC4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2834-2849
0.007
7
8mer
3045-3065
0.006
10
8mer
3476-3488
0.004
8
6mer
1020-1034
0.004
3
6mer
5254-5280
0.003
7
6mer
314-331
0.002
Not Conserved
6mer
3419-3431
0.001
3
6mer
2955-2978
0.001
5
6mer
3809-3826
0.001
2
6mer
3108-3119
0.001
7
6mer
3155-3180
0.001
2
XLOC_002805
hsa-miR-28-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006207
Biotype: transcript isomorph
Gene id: XLOC_002805
Gene Name: XLOC_002805
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-399
0.024
2
6mer
678-691
0.006
1
RP11-180P8.3
hsa-miR-28-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581596
Biotype: lincRNA
Gene id: ENSG00000266411
Gene Name: RP11-180P8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
462-480
0.021
6
6mer
395-414
0.009
7
SOX2-OT
hsa-miR-28-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600778
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-153
0.030
8
RP11-232C2.3
hsa-miR-28-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555954
Biotype: antisense
Gene id: ENSG00000258719
Gene Name: RP11-232C2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
278-301
0.030
7
SOX2-OT
hsa-miR-28-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594942
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
608-630
0.030
8
LINC01222
hsa-miR-28-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427439
Biotype: lincRNA
Gene id: ENSG00000233410
Gene Name: LINC01222
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1695-1722
0.025
1
6mer
236-240
0.005
1
XLOC_001149
hsa-miR-28-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000112
Biotype: transcript isomorph
Gene id: XLOC_001149
Gene Name: XLOC_001149
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1694-1721
0.025
1
6mer
235-239
0.005
1
COLCA1
hsa-miR-28-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000355430
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5396-5419
0.006
5
6mer
5383-5400
0.004
1
8mer+wobble
5067-5087
0.003
5
6mer
797-816
0.003
0
6mer
3283-3305
0.003
3
6mer
4714-4737
0.003
1
6mer
4155-4173
0.002
2
6mer
3076-3094
0.002
2
6mer
2539-2563
0.002
2
9mer
2864-2887
0.001
1
6mer
2989-3011
0.001
2
6mer
3062-3080
0.001
Not Conserved
MROH7-TTC4
hsa-miR-28-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037640.1
Biotype: sense
Gene id: NR_037640.1 (gene)
Gene Name: MROH7-TTC4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2638-2653
0.007
7
8mer
2849-2869
0.006
10
6mer
915-929
0.004
3
8mer
3280-3292
0.004
8
6mer
5121-5147
0.004
7
6mer
204-226
0.002
Not Conserved
6mer
3223-3235
0.001
3
6mer
2759-2782
0.001
5
6mer
3613-3630
0.001
2
6mer
2912-2923
0.001
7
6mer
2959-2984
0.000
2
XLOC_006942
hsa-miR-28-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014875
Biotype: transcript isomorph
Gene id: XLOC_006942
Gene Name: XLOC_006942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1488-1500
0.011
1
8mer
1275-1295
0.009
0
6mer
293-310
0.005
2
6mer
608-626
0.004
2
6mer
1143-1161
0.002
0
RP11-357K6.2
hsa-miR-28-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538783
Biotype: lincRNA
Gene id: ENSG00000255814
Gene Name: RP11-357K6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
281-298
0.020
1
8mer
260-284
0.010
0
AC007743.1
hsa-miR-28-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596663
Biotype: antisense
Gene id: ENSG00000233251
Gene Name: AC007743.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2941-2958
0.013
7
7mer
2917-2934
0.011
9
6mer
2937-2958
0.005
7
RNF157-AS1
hsa-miR-28-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586627
Biotype: antisense
Gene id: ENSG00000267128
Gene Name: RNF157-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
761-767
0.011
1
6mer
209-234
0.007
4
8mer
230-248
0.007
1
6mer
734-757
0.005
2
NUTM2A-AS1
hsa-miR-28-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420424
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
288-314
0.015
0
6mer
213-226
0.005
1
6mer
222-238
0.005
1
6mer
531-545
0.005
1
RP4-671O14.6
hsa-miR-28-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8447-8470
0.003
0
6mer
1287-1299
0.002
1
6mer
2203-2220
0.002
1
6mer
7089-7111
0.002
1
6mer
3636-3640
0.002
1
6mer
4609-4632
0.002
1
6mer
12074-12095
0.002
0
6mer
5661-5685
0.002
2
6mer
3876-3897
0.001
1
6mer
6377-6398
0.001
0
7mer
6112-6128
0.001
0
7mer
3994-4014
0.001
2
6mer
10094-10120
0.001
1
6mer
9169-9193
0.001
1
6mer
4718-4743
0.001
2
6mer
3980-3998
0.001
1
7mer
7430-7446
0.001
1
6mer
4145-4160
0.001
1
6mer
9234-9252
0.001
1
6mer
5753-5775
0.001
1
6mer
6457-6475
0.001
2
6mer
5772-5793
0.000
2
RP11-61I13.3
hsa-miR-28-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607675
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1265-1289
0.009
8
6mer
532-551
0.007
5
6mer
3702-3723
0.005
4
7mer
1031-1048
0.004
3
6mer
1719-1740
0.002
3
6mer
2231-2248
0.002
4
6mer
1562-1577
0.001
1
RP11-498C9.12
hsa-miR-28-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580897
Biotype: antisense
Gene id: ENSG00000264769
Gene Name: RP11-498C9.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-115
0.019
8
6mer
38-59
0.007
8
6mer
229-234
0.004
2
C21orf90
hsa-miR-28-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000330490
Biotype: antisense
Gene id: ENSG00000182912
Gene Name: C21orf90
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
406-416
0.018
1
6mer
591-606
0.012
1
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