LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-28-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
CTD-3096P4.1
hsa-miR-28-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531763
Biotype: antisense
Gene id: ENSG00000254878
Gene Name: CTD-3096P4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-194
0.023
1
6mer
87-99
0.007
3
RP11-802O23.3
hsa-miR-28-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607214
Biotype: antisense
Gene id: ENSG00000272182
Gene Name: RP11-802O23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-249
0.031
9
RP11-196G11.4
hsa-miR-28-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576336
Biotype: sense_intronic
Gene id: ENSG00000262766
Gene Name: RP11-196G11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
416-439
0.020
3
6mer
265-269
0.006
1
6mer
416-420
0.005
1
RP11-546B15.1
hsa-miR-28-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561800
Biotype: antisense
Gene id: ENSG00000261002
Gene Name: RP11-546B15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
219-233
0.022
5
6mer
362-374
0.008
7
LINC01330
hsa-miR-28-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000459923
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-133
0.015
3
7mer
1519-1535
0.008
0
6mer
1432-1459
0.007
4
AC008088.4
hsa-miR-28-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000563569
Biotype: lincRNA
Gene id: ENSG00000260907
Gene Name: AC008088.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
802-824
0.024
1
6mer
60-80
0.006
0
MCM3AP-AS1
hsa-miR-28-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000591223
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-79
0.020
4
7mer
79-93
0.007
1
6mer
127-149
0.003
1
RP11-875O11.1
hsa-miR-28-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000502083
Biotype: antisense
Gene id: ENSG00000245025
Gene Name: RP11-875O11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-202
0.015
1
8mer
401-426
0.008
7
6mer
1337-1363
0.004
4
6mer
684-703
0.004
8
AC017002.4
hsa-miR-28-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426124
Biotype: lincRNA
Gene id: ENSG00000225744
Gene Name: AC017002.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
717-737
0.017
2
7mer
163-179
0.013
1
RP5-1071N3.1
hsa-miR-28-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449034
Biotype: antisense
Gene id: ENSG00000231105
Gene Name: RP5-1071N3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2329-2356
0.010
2
7mer
687-705
0.004
2
6mer
127-146
0.004
1
8mer
1345-1367
0.003
0
6mer
1674-1683
0.003
1
6mer
1474-1501
0.002
2
6mer
980-993
0.002
0
6mer
1674-1691
0.001
0
RP4-568C11.4
hsa-miR-28-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620459
Biotype: lincRNA
Gene id: ENSG00000274173
Gene Name: RP4-568C11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
718-731
0.030
0
XLOC_005077
hsa-miR-28-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010550
Biotype: transcript isomorph
Gene id: XLOC_005077
Gene Name: XLOC_005077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1495-1516
0.014
Not Conserved
7mer
363-383
0.008
0
6mer
386-390
0.004
1
6mer
1963-1981
0.003
3
6mer
3908-3934
0.001
1
GAS6-AS2
hsa-miR-28-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_044993.1
Biotype: lincRNA
Gene id: NR_044993.1 (gene)
Gene Name: GAS6-AS2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
834-852
0.019
0
7mer
673-692
0.011
1
GAS6-AS2
hsa-miR-28-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608651
Biotype: lincRNA
Gene id: ENSG00000272695
Gene Name: GAS6-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
843-861
0.019
0
7mer
682-701
0.011
1
C1orf132
hsa-miR-28-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
14934-14940
0.005
1
6mer
14366-14392
0.003
1
6mer
5874-5896
0.003
2
6mer
864-880
0.002
2
6mer
3475-3498
0.002
2
6mer
14264-14285
0.002
1
6mer
4914-4935
0.002
2
6mer
12822-12843
0.002
1
6mer
11852-11872
0.002
1
6mer
10374-10391
0.002
0
6mer
6793-6814
0.001
2
6mer
6283-6303
0.001
1
6mer
1891-1912
0.001
0
6mer
2243-2266
0.001
Not Conserved
6mer
5302-5321
0.001
1
6mer
6262-6277
0.001
1
6mer
6252-6273
0.000
0
RP11-156E6.1
hsa-miR-28-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000560400
Biotype: sense_overlapping
Gene id: ENSG00000259623
Gene Name: RP11-156E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2668-2686
0.021
1
8mer
1551-1570
0.006
1
6mer
936-962
0.003
1
LINC00421
hsa-miR-28-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
308-332
0.017
0
6mer
758-777
0.013
0
RPA3-AS1
hsa-miR-28-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_034084.1
Biotype: sense
Gene id: NR_034084.1 (gene)
Gene Name: RPA3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
411-430
0.027
8
6mer
1314-1335
0.003
2
XLOC_001412
hsa-miR-28-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002863
Biotype: transcript isomorph
Gene id: XLOC_001412
Gene Name: XLOC_001412
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3480-3491
0.014
4
8mer+wobble
3605-3629
0.007
5
6mer
611-619
0.002
0
6mer
611-627
0.002
2
6mer
1928-1950
0.002
3
6mer
2424-2443
0.001
0
XLOC_013863
hsa-miR-28-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029195
Biotype: transcript isomorph
Gene id: XLOC_013863
Gene Name: XLOC_013863
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
131-158
0.006
1
7mer
852-870
0.006
1
6mer
327-351
0.003
0
6mer
1208-1225
0.001
0
6mer
1913-1932
0.001
1
7mer
1756-1775
0.001
Not Conserved
6mer
1472-1487
0.001
1
6mer
1713-1732
0.001
2
6mer
1423-1442
0.001
1
6mer
1392-1410
0.001
0
6mer
1349-1364
0.001
1
6mer
1315-1333
0.001
0
6mer
1624-1639
0.001
2
6mer
1515-1534
0.001
1
6mer
1255-1271
0.001
0
6mer
1682-1701
0.001
1
6mer
1531-1550
0.000
1
7mer
1605-1624
0.000
0
6mer
1547-1565
0.000
1
6mer
1578-1592
0.000
1
6mer
1698-1716
0.000
1
6mer
1829-1847
0.000
0
6mer
1499-1518
0.000
0
6mer
1287-1302
0.000
Not Conserved
6mer
1814-1832
0.000
1
6mer
1562-1581
0.000
0
6mer
1454-1472
0.000
Not Conserved
6mer
1636-1654
0.000
0
6mer
1729-1743
0.000
0
6mer
1771-1790
0.000
Not Conserved
6mer
1454-1476
0.000
Not Conserved
6mer
1787-1801
0.000
0
6mer
1798-1817
0.000
Not Conserved
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept