LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
RP11-488I20.3
hsa-miR-28-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_027080.2
Biotype: lincRNA
Gene id: NR_027080.2 (gene)
Gene Name: RP11-488I20.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1267-1285
0.027
0
6mer
470-491
0.004
0
EMX2OS
hsa-miR-28-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000551288
Biotype: antisense
Gene id: ENSG00000229847
Gene Name: EMX2OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5088-5107
0.007
4
7mer
6661-6682
0.007
2
7mer
5971-5995
0.006
2
6mer
356-375
0.005
0
6mer
6628-6646
0.002
1
6mer
1044-1071
0.001
Not Conserved
6mer
5744-5770
0.001
0
6mer
4831-4850
0.001
1
XLOC_004989
hsa-miR-28-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010469
Biotype: transcript isomorph
Gene id: XLOC_004989
Gene Name: XLOC_004989
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1707-1732
0.024
2
6mer
639-661
0.005
1
6mer
563-580
0.002
Not Conserved
LINC01105
hsa-miR-28-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444416
Biotype: lincRNA
Gene id: ENSG00000232044
Gene Name: LINC01105
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-52
0.023
1
6mer
2059-2078
0.005
1
6mer
1077-1102
0.003
1
AC093642.3
hsa-miR-28-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451070
Biotype: retained_intron
Gene id: ENSG00000237940
Gene Name: AC093642.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
454-474
0.018
0
6mer
454-470
0.013
0
CTB-186H2.3
hsa-miR-28-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000612584
Biotype: antisense
Gene id: ENSG00000275431
Gene Name: CTB-186H2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-92
0.022
1
6mer
287-313
0.009
6
ADIPOQ-AS1
hsa-miR-28-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000422718
Biotype: antisense
Gene id: ENSG00000226482
Gene Name: ADIPOQ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
748-763
0.009
2
7mer
2755-2767
0.005
2
6mer
1592-1616
0.004
8
6mer
939-958
0.003
2
6mer
398-413
0.003
0
6mer
379-402
0.003
1
6mer
696-720
0.002
2
6mer
1387-1406
0.001
1
6mer
1943-1969
0.001
1
PAX8-AS1
hsa-miR-28-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422956
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
380-394
0.007
2
7mer
8412-8429
0.007
8
6mer
589-606
0.004
2
7mer
1677-1689
0.004
1
6mer
9763-9785
0.002
0
6mer
2249-2274
0.002
1
6mer
6659-6678
0.002
2
7mer
5906-5931
0.002
0
6mer
7844-7871
0.001
1
6mer
5452-5470
0.001
Not Conserved
6mer
4593-4610
0.001
1
6mer
9781-9800
0.001
1
LINC00260
hsa-miR-28-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046213.1
Biotype: sense
Gene id: NR_046213.1 (gene)
Gene Name: LINC00260
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-36
0.017
5
7mer
585-604
0.007
1
6mer
12-29
0.006
3
SEC24B-AS1
hsa-miR-28-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000499713
Biotype: antisense
Gene id: ENSG00000247950
Gene Name: SEC24B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1179-1202
0.031
5
CTD-2530H12.8
hsa-miR-28-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532553
Biotype: sense_intronic
Gene id: ENSG00000255434
Gene Name: CTD-2530H12.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-164
0.031
5
XLOC_014019
hsa-miR-28-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029091
Biotype: transcript isomorph
Gene id: XLOC_014019
Gene Name: XLOC_014019
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3750-3765
0.014
1
6mer
485-501
0.006
3
6mer
553-574
0.005
2
6mer
1008-1023
0.003
4
6mer
1728-1744
0.001
2
RP11-168K11.3
hsa-miR-28-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437712
Biotype: lincRNA
Gene id: ENSG00000233817
Gene Name: RP11-168K11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2513-2538
0.010
6
7mer
1641-1666
0.005
1
6mer
293-313
0.004
3
7mer
2064-2071
0.004
2
6mer
733-760
0.004
2
6mer
1318-1339
0.002
2
6mer
1797-1822
0.001
1
6mer
788-811
0.001
0
RP11-556O9.2
hsa-miR-28-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582889
Biotype: antisense
Gene id: ENSG00000264513
Gene Name: RP11-556O9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-31
0.031
4
XLOC_010820
hsa-miR-28-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022986
Biotype: transcript isomorph
Gene id: XLOC_010820
Gene Name: XLOC_010820
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
198-222
0.016
6
6mer
27-50
0.015
6
AP002954.3
hsa-miR-28-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530198
Biotype: antisense
Gene id: ENSG00000255176
Gene Name: AP002954.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
535-552
0.019
1
6mer
346-365
0.004
2
6mer
335-361
0.004
1
6mer
643-663
0.004
1
XLOC_009474
hsa-miR-28-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7260-7276
0.012
0
8mer
5915-5931
0.010
6
7mer
1682-1703
0.004
4
7mer
1634-1647
0.002
4
6mer
2685-2708
0.002
2
6mer
1544-1555
0.001
0
6mer
1594-1606
0.001
1
RP11-379P15.1
hsa-miR-28-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499752
Biotype: lincRNA
Gene id: ENSG00000246820
Gene Name: RP11-379P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3391-3416
0.015
0
7mer
625-638
0.009
1
6mer
3149-3167
0.003
1
6mer
642-660
0.003
1
6mer
826-844
0.001
Not Conserved
RP11-366M4.13
hsa-miR-28-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503778
Biotype: lincRNA
Gene id: ENSG00000250887
Gene Name: RP11-366M4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-161
0.031
0
RP11-259K5.2
hsa-miR-28-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000604992
Biotype: antisense
Gene id: ENSG00000270194
Gene Name: RP11-259K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
202-217
0.013
1
6mer
1795-1812
0.009
9
9mer
1975-2001
0.005
1
6mer
1631-1646
0.003
3
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