LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
RP11-266K4.14
hsa-miR-28-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618256
Biotype: lincRNA
Gene id: ENSG00000275367
Gene Name: RP11-266K4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1123-1139
0.011
1
7mer
1667-1694
0.007
1
7mer
412-434
0.006
0
6mer
3185-3210
0.004
Not Conserved
6mer
2283-2303
0.003
0
NR2F2-AS1
hsa-miR-28-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000502125
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1610-1633
0.019
7
8mer
1552-1574
0.007
4
7mer
1248-1274
0.006
1
LOC388692
hsa-miR-28-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027002.1
Biotype: lincRNA
Gene id: NR_027002.1 (gene)
Gene Name: LOC388692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
12253-12257
0.011
1
7mer
3072-3091
0.006
2
6mer
1522-1540
0.003
1
6mer
1839-1864
0.002
1
7mer
3526-3546
0.002
0
6mer
9254-9278
0.002
2
6mer
8030-8052
0.002
1
8mer
9307-9326
0.001
0
6mer
9078-9103
0.001
0
6mer
7757-7769
0.001
0
XLOC_013007
hsa-miR-28-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026949
Biotype: transcript isomorph
Gene id: XLOC_013007
Gene Name: XLOC_013007
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-125
0.031
0
LINC00174
hsa-miR-28-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000421767
Biotype: lincRNA
Gene id: ENSG00000179406
Gene Name: LINC00174
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3452-3475
0.006
1
7mer
1888-1905
0.002
0
7mer
3161-3181
0.002
0
7mer
2497-2512
0.002
1
7mer
3391-3407
0.002
1
7mer
2434-2445
0.002
1
7mer
2733-2750
0.002
0
6mer
546-563
0.001
Not Conserved
6mer
998-1015
0.001
0
8mer
3037-3059
0.001
0
6mer
743-760
0.001
Not Conserved
6mer
2182-2199
0.001
0
7mer
1297-1314
0.001
0
8mer
3018-3040
0.001
0
7mer
1265-1280
0.001
0
7mer
966-991
0.001
Not Conserved
7mer
3099-3114
0.001
0
6mer
1387-1402
0.001
0
6mer
1165-1181
0.001
0
7mer
1254-1278
0.001
0
AC024560.2
hsa-miR-28-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424493
Biotype: lincRNA
Gene id: ENSG00000236833
Gene Name: AC024560.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1219-1246
0.020
0
6mer
361-373
0.012
0
RP11-301G19.1
hsa-miR-28-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412872
Biotype: lincRNA
Gene id: ENSG00000227706
Gene Name: RP11-301G19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1498-1511
0.025
0
6mer
222-236
0.004
Not Conserved
6mer
639-665
0.002
Not Conserved
AC004448.5
hsa-miR-28-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000610229
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
783-804
0.031
1
LOC100128885
hsa-miR-28-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
300-323
0.015
0
6mer
4055-4073
0.011
0
6mer
41-63
0.006
0
MROH7-TTC4
hsa-miR-28-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037641.1
Biotype: sense
Gene id: NR_037641.1 (gene)
Gene Name: MROH7-TTC4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2654-2669
0.008
7
8mer
2865-2885
0.006
10
6mer
915-929
0.004
3
8mer
3296-3308
0.004
8
6mer
4900-4926
0.003
7
6mer
204-226
0.002
Not Conserved
6mer
3239-3251
0.001
3
6mer
2928-2939
0.001
7
6mer
2775-2798
0.001
5
6mer
3629-3646
0.001
2
6mer
2975-3000
0.000
2
AC109333.10
hsa-miR-28-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000438266
Biotype: antisense
Gene id: ENSG00000227495
Gene Name: AC109333.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-531
0.018
4
8mer
122-137
0.009
1
6mer
255-272
0.004
4
XLOC_013548
hsa-miR-28-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028197
Biotype: transcript isomorph
Gene id: XLOC_013548
Gene Name: XLOC_013548
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
402-428
0.010
1
7mer
357-375
0.008
1
7mer
574-589
0.006
0
6mer
46-61
0.004
0
6mer
462-480
0.002
Not Conserved
OIP5-AS1
hsa-miR-28-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5607-5633
0.011
4
8mer
6254-6277
0.009
1
8mer
486-504
0.006
1
6mer
3554-3573
0.003
6
6mer
1249-1269
0.002
2
LOC101926935
hsa-miR-28-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4142-4146
0.009
0
6mer
5071-5093
0.008
0
8mer+wobble
2442-2461
0.006
0
6mer
3627-3648
0.004
0
6mer
1129-1153
0.002
Not Conserved
6mer
3195-3221
0.001
Not Conserved
6mer
1087-1091
0.001
Not Conserved
XLOC_006677
hsa-miR-28-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014460
Biotype: transcript isomorph
Gene id: XLOC_006677
Gene Name: XLOC_006677
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-93
0.007
1
6mer
1491-1514
0.004
1
6mer
1859-1881
0.004
0
6mer
1331-1356
0.003
2
6mer
1782-1799
0.003
0
6mer
1650-1673
0.003
0
6mer
1199-1222
0.002
1
6mer
1436-1459
0.002
0
6mer
1282-1303
0.002
0
6mer
1142-1167
0.001
0
6mer
1093-1118
0.001
0
RP11-58K22.1
hsa-miR-28-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528183
Biotype: lincRNA
Gene id: ENSG00000255451
Gene Name: RP11-58K22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-237
0.031
2
MCM3AP-AS1
hsa-miR-28-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000455567
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-60
0.021
4
7mer
60-74
0.007
1
6mer
108-130
0.003
1
RP11-48B3.4
hsa-miR-28-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000569134
Biotype: lincRNA
Gene id: ENSG00000260317
Gene Name: RP11-48B3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
419-435
0.025
2
7mer
799-826
0.006
1
XLOC_007037
hsa-miR-28-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014958
Biotype: transcript isomorph
Gene id: XLOC_007037
Gene Name: XLOC_007037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
446-468
0.014
1
6mer
27-53
0.010
1
7mer
377-396
0.007
0
MCM3AP-AS1
hsa-miR-28-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_002776.3
Biotype: antisense
Gene id: NR_002776.3 (gene)
Gene Name: MCM3AP-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-60
0.021
4
7mer
60-74
0.007
1
6mer
108-130
0.003
1
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