LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
DLGAP1-AS2
hsa-miR-28-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000573177
Biotype: antisense
Gene id: ENSG00000262001
Gene Name: DLGAP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
769-775
0.025
5
6mer
1294-1312
0.004
0
6mer
368-393
0.004
2
LOC101926889
hsa-miR-28-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_109994.1
Biotype: antisense
Gene id: NR_109994.1 (gene)
Gene Name: LOC101926889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-340
0.025
1
6mer
658-670
0.003
0
7mer
1210-1228
0.002
0
6mer
1228-1232
0.002
0
BCYRN1
hsa-miR-28-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418539
Biotype: lincRNA
Gene id: ENSG00000236824
Gene Name: BCYRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6151-6173
0.011
0
7mer
2150-2170
0.007
2
6mer
518-539
0.004
0
6mer
11133-11155
0.003
2
6mer
655-677
0.003
0
6mer
2547-2574
0.002
1
6mer
5631-5647
0.001
4
6mer
5940-5962
0.001
0
6mer
5461-5485
0.001
0
AC073635.5
hsa-miR-28-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000476561
Biotype: antisense
Gene id: ENSG00000250990
Gene Name: AC073635.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-136
0.024
1
6mer
461-478
0.008
3
XLOC_006312
hsa-miR-28-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013655
Biotype: transcript isomorph
Gene id: XLOC_006312
Gene Name: XLOC_006312
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-508
0.032
0
XLOC_004229
hsa-miR-28-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008716
Biotype: transcript isomorph
Gene id: XLOC_004229
Gene Name: XLOC_004229
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
702-723
0.019
0
7mer
606-623
0.008
0
6mer
854-870
0.005
0
RP11-84C10.2
hsa-miR-28-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555624
Biotype: lincRNA
Gene id: ENSG00000136315
Gene Name: RP11-84C10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-164
0.017
1
7mer
188-204
0.014
0
RP11-206L10.3
hsa-miR-28-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2003-2020
0.020
0
8mer
4622-4636
0.005
Not Conserved
6mer
1884-1900
0.004
0
6mer
4633-4654
0.003
Not Conserved
XLOC_006324
hsa-miR-28-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013664
Biotype: transcript isomorph
Gene id: XLOC_006324
Gene Name: XLOC_006324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-85
0.032
0
LINC00273
hsa-miR-28-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000539813
Biotype: lincRNA
Gene id: ENSG00000256642
Gene Name: LINC00273
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-120
0.026
0
6mer
381-406
0.006
0
LINC00649
hsa-miR-28-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000595747
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
631-648
0.017
2
8mer+mismatch
433-449
0.006
5
6mer
85-89
0.006
1
6mer
771-789
0.003
0
RP11-305O4.3
hsa-miR-28-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608883
Biotype: antisense
Gene id: ENSG00000273455
Gene Name: RP11-305O4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-58
0.032
1
MIR335
hsa-miR-28-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000604666
Biotype: antisense
Gene id: ENSG00000270823
Gene Name: MIR335
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2468-2492
0.025
8
6mer
1071-1075
0.002
1
6mer
1181-1202
0.002
1
6mer
2106-2128
0.002
1
XLOC_006150
hsa-miR-28-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014163
Biotype: transcript isomorph
Gene id: XLOC_006150
Gene Name: XLOC_006150
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
298-303
0.032
0
CTD-2609K8.3
hsa-miR-28-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531268
Biotype: sense_intronic
Gene id: ENSG00000255165
Gene Name: CTD-2609K8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-245
0.032
0
BARX1-AS1
hsa-miR-28-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000453045
Biotype: lincRNA
Gene id: ENSG00000235601
Gene Name: BARX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1130-1136
0.020
0
6mer
61-75
0.003
1
6mer
887-904
0.003
1
6mer
306-324
0.003
1
8mer+mismatch
993-1008
0.002
1
XLOC_012731
hsa-miR-28-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026380
Biotype: transcript isomorph
Gene id: XLOC_012731
Gene Name: XLOC_012731
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-195
0.032
0
RP11-762H8.1
hsa-miR-28-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560057
Biotype: antisense
Gene id: ENSG00000259322
Gene Name: RP11-762H8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-436
0.028
0
6mer
254-272
0.003
1
XLOC_011494
hsa-miR-28-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024132
Biotype: transcript isomorph
Gene id: XLOC_011494
Gene Name: XLOC_011494
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24-50
0.017
1
6mer
742-760
0.014
1
RP11-403I13.8
hsa-miR-28-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000578899
Biotype: lincRNA
Gene id: ENSG00000272419
Gene Name: RP11-403I13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2293-2297
0.012
1
6mer
1601-1625
0.006
2
6mer
104-116
0.004
0
8mer
1654-1673
0.003
Not Conserved
6mer
1425-1450
0.002
Not Conserved
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