LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
ASH1L-AS1
hsa-miR-28-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027023.1
Biotype: antisense
Gene id: NR_027023.1 (gene)
Gene Name: ASH1L-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1823-1837
0.018
3
7mer
482-500
0.005
3
6mer
230-250
0.005
5
6mer
1123-1140
0.002
1
6mer
537-560
0.002
Not Conserved
6mer
537-553
0.001
Not Conserved
PROX1-AS1
hsa-miR-28-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000598091
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
113-135
0.022
7
7mer
169-185
0.010
3
RP11-796I2.1
hsa-miR-28-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000446340
Biotype: antisense
Gene id: ENSG00000227562
Gene Name: RP11-796I2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
432-448
0.033
2
RP5-872K7.7
hsa-miR-28-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000434043
Biotype: antisense
Gene id: ENSG00000228604
Gene Name: RP5-872K7.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-157
0.017
0
6mer
175-179
0.010
4
8mer
288-314
0.005
0
LOXL1-AS1
hsa-miR-28-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567257
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
393-414
0.010
1
8mer
1983-2009
0.007
1
6mer
2185-2200
0.004
0
6mer
556-569
0.003
1
6mer
839-861
0.003
1
6mer
1396-1419
0.003
1
6mer
753-773
0.002
Not Conserved
CTD-2643K12.3
hsa-miR-28-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558874
Biotype: lincRNA
Gene id: ENSG00000259724
Gene Name: CTD-2643K12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2751-2774
0.028
2
6mer
775-794
0.003
1
6mer
1149-1174
0.001
0
LINC00649
hsa-miR-28-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000613667
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
691-708
0.019
2
6mer
93-111
0.008
2
8mer+mismatch
491-509
0.006
5
KIAA0087
hsa-miR-28-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_022006.1
Biotype: sense
Gene id: NR_022006.1 (gene)
Gene Name: KIAA0087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4274-4289
0.017
0
7mer
4099-4111
0.013
4
6mer
1174-1201
0.002
0
GJA9-MYCBP
hsa-miR-28-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037634.1
Biotype: sense
Gene id: NR_037634.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-127
0.028
2
6mer
4094-4114
0.003
1
6mer
2883-2898
0.002
1
XLOC_003440
hsa-miR-28-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007971
Biotype: transcript isomorph
Gene id: XLOC_003440
Gene Name: XLOC_003440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
2105-2120
0.008
2
7mer
617-639
0.005
0
7mer
648-672
0.005
0
7mer
469-486
0.005
0
6mer
396-412
0.004
0
6mer
2003-2027
0.004
1
6mer
2027-2042
0.001
1
RP13-870H17.3
hsa-miR-28-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000617529
Biotype: lincRNA
Gene id: ENSG00000254872
Gene Name: RP13-870H17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2067-2083
0.010
1
8mer
2620-2642
0.007
0
7mer
637-660
0.006
1
7mer
2801-2826
0.006
0
6mer
672-695
0.004
1
TMX2-CTNND1
hsa-miR-28-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037646.1
Biotype: sense
Gene id: NR_037646.1 (gene)
Gene Name: TMX2-CTNND1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
340-355
0.010
9
6mer
349-369
0.005
7
6mer
6238-6248
0.004
0
6mer
472-494
0.004
7
7mer
1555-1573
0.003
5
6mer
482-500
0.002
1
6mer
4305-4320
0.002
3
6mer
4738-4760
0.002
2
LINC00284
hsa-miR-28-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000439707
Biotype: lincRNA
Gene id: ENSG00000233725
Gene Name: LINC00284
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2397-2417
0.010
2
7mer
2417-2434
0.009
1
6mer
215-241
0.005
5
6mer
1723-1741
0.004
2
6mer
551-572
0.003
1
6mer
1392-1413
0.002
0
AC011306.1
hsa-miR-28-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451034
Biotype: lincRNA
Gene id: ENSG00000229805
Gene Name: AC011306.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
344-356
0.016
0
6mer
500-519
0.006
2
6mer
394-414
0.004
1
6mer
207-224
0.003
0
6mer
321-336
0.003
1
RP11-99J16__A.2
hsa-miR-28-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412344
Biotype: antisense
Gene id: ENSG00000244137
Gene Name: RP11-99J16__A.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-282
0.020
4
7mer
482-508
0.008
0
6mer
119-134
0.004
3
XLOC_013363
hsa-miR-28-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026818
Biotype: transcript isomorph
Gene id: XLOC_013363
Gene Name: XLOC_013363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1756-1776
0.007
0
6mer
2765-2782
0.007
1
6mer
3128-3149
0.006
0
6mer
82-98
0.005
0
6mer
472-491
0.004
0
6mer
78-98
0.004
0
LINC01122
hsa-miR-28-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422793
Biotype: lincRNA
Gene id: ENSG00000233723
Gene Name: LINC01122
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-233
0.021
6
6mer
642-654
0.011
5
WWC2-AS1
hsa-miR-28-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511846
Biotype: antisense
Gene id: ENSG00000251128
Gene Name: WWC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
285-305
0.024
3
7mer
247-263
0.008
1
XLOC_010271
hsa-miR-28-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021009
Biotype: transcript isomorph
Gene id: XLOC_010271
Gene Name: XLOC_010271
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-51
0.032
0
XLOC_000730
hsa-miR-28-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000016
Biotype: transcript isomorph
Gene id: XLOC_000730
Gene Name: XLOC_000730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
99-116
0.005
1
6mer
5543-5570
0.004
1
6mer
353-377
0.004
1
7mer
3538-3556
0.004
3
6mer
4731-4756
0.003
0
8mer+wobble
1027-1048
0.002
1
6mer
2254-2276
0.002
4
6mer
2683-2702
0.002
0
6mer
4124-4128
0.002
1
6mer
1877-1898
0.001
1
6mer
2955-2979
0.001
0
6mer
2656-2674
0.001
2
6mer
3163-3180
0.001
0
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