LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
AC104777.2
hsa-miR-28-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441356
Biotype: lincRNA
Gene id: ENSG00000236049
Gene Name: AC104777.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-160
0.013
1
6mer
2357-2372
0.007
4
6mer
2230-2249
0.007
6
6mer
613-622
0.004
1
6mer
949-968
0.002
1
CTA-280A3.2
hsa-miR-28-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623760
Biotype: lincRNA
Gene id: ENSG00000279712
Gene Name: CTA-280A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
126-143
0.005
1
8mer
2053-2074
0.004
2
8mer
7035-7057
0.004
1
6mer
994-998
0.003
1
6mer
566-590
0.003
0
6mer
6963-6979
0.002
1
6mer
2564-2581
0.002
2
7mer
4721-4740
0.002
0
6mer
1123-1142
0.001
1
6mer
1001-1028
0.001
1
6mer
1063-1082
0.001
0
6mer
1224-1245
0.001
0
6mer
1168-1188
0.001
0
6mer
1031-1048
0.001
0
6mer
1158-1181
0.001
0
6mer
1136-1155
0.001
0
6mer
6384-6401
0.001
0
6mer
1142-1162
0.001
Not Conserved
6mer
1175-1194
0.001
0
XIST
hsa-miR-28-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1607-1632
0.006
4
7mer
7946-7965
0.005
4
6mer
6679-6704
0.004
3
6mer
7085-7102
0.002
1
6mer
1250-1267
0.002
1
6mer
9763-9780
0.002
0
6mer
10319-10344
0.002
1
6mer
13885-13896
0.002
2
6mer
15409-15432
0.002
1
6mer
14436-14462
0.002
1
6mer
10600-10622
0.001
1
6mer
1587-1608
0.001
2
6mer
7029-7051
0.001
1
6mer
7853-7871
0.001
1
6mer
7845-7871
0.001
1
CERS6-AS1
hsa-miR-28-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594898
Biotype: antisense
Gene id: ENSG00000227617
Gene Name: CERS6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
60-78
0.024
1
6mer
42-56
0.010
0
AC142119.1
hsa-miR-28-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428280
Biotype: lincRNA
Gene id: ENSG00000236989
Gene Name: AC142119.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
810-832
0.024
1
6mer
794-814
0.009
5
RP11-324L17.1
hsa-miR-28-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608775
Biotype: lincRNA
Gene id: ENSG00000272551
Gene Name: RP11-324L17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-270
0.034
2
XLOC_004950
hsa-miR-28-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010434
Biotype: transcript isomorph
Gene id: XLOC_004950
Gene Name: XLOC_004950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-138
0.029
1
6mer
19-32
0.005
0
U82695.10
hsa-miR-28-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000569962
Biotype: lincRNA
Gene id: ENSG00000259886
Gene Name: U82695.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-357
0.026
1
6mer
2116-2142
0.004
3
6mer
2412-2431
0.003
0
6mer
1266-1287
0.001
0
RP11-27M9.1
hsa-miR-28-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559570
Biotype: lincRNA
Gene id: ENSG00000259390
Gene Name: RP11-27M9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-79
0.025
5
7mer
138-160
0.008
1
RP11-93G5.1
hsa-miR-28-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617568
Biotype: lincRNA
Gene id: ENSG00000274317
Gene Name: RP11-93G5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
761-772
0.015
1
8mer
183-201
0.012
1
6mer
182-193
0.004
1
6mer
440-455
0.003
Not Conserved
RP1-266L20.4
hsa-miR-28-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430250
Biotype: antisense
Gene id: ENSG00000227704
Gene Name: RP1-266L20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
255-282
0.033
1
XLOC_009564
hsa-miR-28-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019770
Biotype: transcript isomorph
Gene id: XLOC_009564
Gene Name: XLOC_009564
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-26
0.033
9
RP11-416I2.1
hsa-miR-28-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562897
Biotype: lincRNA
Gene id: ENSG00000260328
Gene Name: RP11-416I2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1057-1082
0.015
1
7mer
2209-2224
0.006
1
7mer
2509-2528
0.005
1
6mer
2994-3011
0.004
0
7mer
2135-2162
0.003
Not Conserved
LINC01257
hsa-miR-28-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000376678
Biotype: lincRNA
Gene id: ENSG00000204603
Gene Name: LINC01257
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-95
0.020
1
8mer
449-465
0.013
1
RP11-363G10.2
hsa-miR-28-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375625
Biotype: lincRNA
Gene id: ENSG00000179028
Gene Name: RP11-363G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-106
0.024
2
7mer
1556-1577
0.007
1
6mer
1458-1476
0.002
0
AC000403.4
hsa-miR-28-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613696
Biotype: lincRNA
Gene id: ENSG00000278727
Gene Name: AC000403.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-99
0.025
0
7mer
2331-2351
0.006
1
6mer
872-897
0.002
1
XLOC_008795
hsa-miR-28-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018493
Biotype: transcript isomorph
Gene id: XLOC_008795
Gene Name: XLOC_008795
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1409-1426
0.030
1
7mer
895-911
0.003
0
RP3-340N1.2
hsa-miR-28-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431027
Biotype: lincRNA
Gene id: ENSG00000227066
Gene Name: RP3-340N1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2449-2466
0.033
1
DARS-AS1
hsa-miR-28-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000593405
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
576-593
0.013
4
7mer
180-206
0.009
3
6mer
480-496
0.006
3
6mer
400-424
0.005
3
CACNA1C-AS1
hsa-miR-28-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541673
Biotype: antisense
Gene id: ENSG00000246627
Gene Name: CACNA1C-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
472-492
0.010
9
7mer
65-90
0.009
0
7mer
39-64
0.005
1
6mer
15-27
0.005
2
6mer
113-131
0.003
1
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