LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
LINC01093
hsa-miR-28-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_039977.1
Biotype: lincRNA
Gene id: NR_039977.1 (gene)
Gene Name: LINC01093
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
650-676
0.029
3
6mer
1113-1131
0.006
3
RP11-27M9.1
hsa-miR-28-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558818
Biotype: lincRNA
Gene id: ENSG00000259390
Gene Name: RP11-27M9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-157
0.026
5
7mer
216-238
0.009
1
RP11-789C2.1
hsa-miR-28-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000420721
Biotype: lincRNA
Gene id: ENSG00000251598
Gene Name: RP11-789C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-70
0.035
1
LL22NC03-22D1.1
hsa-miR-28-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
167-181
0.006
1
7mer
16232-16253
0.005
1
6mer
16773-16797
0.002
1
6mer
18019-18039
0.002
Not Conserved
7mer
25615-25636
0.002
1
6mer
14298-14302
0.002
0
6mer
12622-12639
0.002
1
6mer
1537-1550
0.002
0
6mer
8118-8135
0.002
1
6mer
10417-10437
0.002
0
6mer
7151-7167
0.002
2
6mer
1328-1342
0.001
0
6mer
23065-23081
0.001
0
6mer
15285-15296
0.001
2
6mer
10523-10544
0.001
0
6mer
23107-23127
0.001
1
XLOC_007440
hsa-miR-28-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016048
Biotype: transcript isomorph
Gene id: XLOC_007440
Gene Name: XLOC_007440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
449-467
0.013
1
6mer
503-522
0.012
1
6mer
120-133
0.010
1
XLOC_000782
hsa-miR-28-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001452
Biotype: transcript isomorph
Gene id: XLOC_000782
Gene Name: XLOC_000782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
731-756
0.016
0
6mer
1931-1944
0.014
0
6mer
160-179
0.003
Not Conserved
6mer
1182-1194
0.002
Not Conserved
RP5-1028L10.1
hsa-miR-28-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430098
Biotype: antisense
Gene id: ENSG00000227091
Gene Name: RP5-1028L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
387-408
0.014
7
8mer
156-175
0.013
5
6mer
312-335
0.007
9
AC010145.4
hsa-miR-28-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422415
Biotype: lincRNA
Gene id: ENSG00000226764
Gene Name: AC010145.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
34-54
0.016
7
7mer
43-54
0.015
3
6mer
416-429
0.004
0
NEAT1
hsa-miR-28-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
21677-21699
0.006
0
7mer
22487-22507
0.005
0
7mer
817-843
0.005
1
7mer
13447-13470
0.003
1
6mer
9343-9369
0.003
1
6mer
1488-1505
0.002
3
6mer
18792-18815
0.002
0
6mer
4848-4868
0.002
1
6mer
11434-11461
0.002
1
6mer
5184-5207
0.001
1
6mer
6568-6589
0.001
1
6mer
7358-7383
0.001
1
6mer
13548-13573
0.001
2
6mer
7404-7424
0.001
2
XLOC_000529
hsa-miR-28-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001247
Biotype: transcript isomorph
Gene id: XLOC_000529
Gene Name: XLOC_000529
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-198
0.013
2
8mer
383-389
0.011
2
6mer
970-984
0.005
3
6mer
3803-3828
0.003
1
6mer
2109-2129
0.001
1
LINC00174
hsa-miR-28-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026873.1
Biotype: antisense
Gene id: NR_026873.1 (gene)
Gene Name: LINC00174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3452-3475
0.007
1
7mer
3391-3407
0.003
1
7mer
3161-3181
0.003
0
7mer
1888-1905
0.002
0
7mer
2497-2512
0.002
1
7mer
2434-2445
0.002
1
7mer
2733-2750
0.002
0
6mer
546-563
0.001
Not Conserved
6mer
998-1015
0.001
0
8mer
3037-3059
0.001
0
6mer
743-760
0.001
Not Conserved
6mer
2182-2199
0.001
0
7mer
3099-3114
0.001
0
7mer
1297-1314
0.001
0
8mer
3018-3040
0.001
0
7mer
966-991
0.001
Not Conserved
7mer
1265-1280
0.001
0
6mer
1387-1402
0.001
0
6mer
1165-1181
0.001
0
7mer
1254-1278
0.001
0
XLOC_001002
hsa-miR-28-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001662
Biotype: transcript isomorph
Gene id: XLOC_001002
Gene Name: XLOC_001002
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-467
0.018
0
8mer
396-415
0.016
1
RP11-212I21.2
hsa-miR-28-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565307
Biotype: lincRNA
Gene id: ENSG00000260135
Gene Name: RP11-212I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
397-417
0.034
13
RP11-461A8.5
hsa-miR-28-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000622137
Biotype: antisense
Gene id: ENSG00000276754
Gene Name: RP11-461A8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-372
0.023
0
6mer
44-63
0.007
1
6mer
291-307
0.005
1
GJA9-MYCBP
hsa-miR-28-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037633.1
Biotype: sense
Gene id: NR_037633.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-127
0.028
2
6mer
4962-4982
0.003
1
6mer
3751-3766
0.002
1
6mer
3611-3630
0.001
4
RP11-1E6.1
hsa-miR-28-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508352
Biotype: retained_intron
Gene id: ENSG00000250657
Gene Name: RP11-1E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-278
0.019
3
7mer
20-32
0.007
1
6mer
321-333
0.007
4
XLOC_010288
hsa-miR-28-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021525
Biotype: transcript isomorph
Gene id: XLOC_010288
Gene Name: XLOC_010288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
645-660
0.007
1
7mer
872-890
0.007
1
6mer
494-519
0.006
1
6mer
2072-2088
0.006
0
6mer
413-432
0.005
0
6mer
1381-1403
0.003
0
XLOC_008910
hsa-miR-28-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00019001
Biotype: transcript isomorph
Gene id: XLOC_008910
Gene Name: XLOC_008910
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
559-582
0.034
1
AC008079.10
hsa-miR-28-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
20274-20298
0.013
10
6mer
13507-13519
0.003
10
6mer
2266-2270
0.002
2
6mer
3795-3810
0.001
1
6mer
14978-15004
0.001
2
8mer+wobble
9061-9077
0.001
2
6mer
13459-13480
0.001
7
7mer
7823-7842
0.001
0
6mer
10362-10383
0.001
0
6mer
6097-6122
0.001
2
6mer
8570-8585
0.001
0
6mer
5266-5278
0.001
0
7mer
2805-2821
0.001
0
6mer
7702-7723
0.001
Not Conserved
6mer
8562-8585
0.001
2
6mer
17209-17223
0.001
Not Conserved
6mer
10322-10347
0.000
0
6mer
5205-5226
0.000
0
XLOC_013601
hsa-miR-28-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028261
Biotype: transcript isomorph
Gene id: XLOC_013601
Gene Name: XLOC_013601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
10329-10354
0.007
1
8mer
9497-9518
0.006
1
6mer
10277-10299
0.004
1
8mer
914-932
0.004
0
6mer
380-403
0.003
0
7mer
1979-2000
0.002
1
6mer
1770-1788
0.002
1
6mer
9342-9366
0.002
1
6mer
2740-2762
0.001
0
6mer
7625-7643
0.001
Not Conserved
6mer
2000-2018
0.001
1
6mer
8487-8498
0.001
0
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