LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
AC003958.2
hsa-miR-28-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000432258
Biotype: antisense
Gene id: ENSG00000234859
Gene Name: AC003958.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
312-332
0.010
7
8mer
2868-2888
0.005
3
6mer
82-103
0.004
3
6mer
312-336
0.004
5
8mer
2052-2072
0.004
5
7mer
1479-1494
0.003
1
6mer
3030-3051
0.003
6
6mer
2926-2949
0.001
1
6mer
2110-2133
0.001
1
RP11-597D13.9
hsa-miR-28-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503611
Biotype: antisense
Gene id: ENSG00000248429
Gene Name: RP11-597D13.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2322-2342
0.028
0
6mer
655-676
0.004
4
6mer
2089-2110
0.003
1
RP11-61I13.3
hsa-miR-28-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607215
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2905-2929
0.022
8
6mer
446-465
0.007
5
7mer
2671-2688
0.006
3
LOC100133331
hsa-miR-28-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028327.1
Biotype: lincRNA
Gene id: NR_028327.1 (gene)
Gene Name: LOC100133331
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-350
0.005
Not Conserved
7mer
3852-3869
0.004
0
7mer
2448-2466
0.003
0
6mer
4043-4062
0.003
Not Conserved
7mer
3596-3622
0.003
Not Conserved
7mer
577-594
0.002
Not Conserved
7mer
3757-3774
0.002
Not Conserved
7mer
300-317
0.002
Not Conserved
7mer
2915-2932
0.002
Not Conserved
7mer
966-982
0.002
Not Conserved
7mer
3274-3300
0.002
Not Conserved
8mer
2091-2115
0.002
Not Conserved
7mer
2697-2722
0.001
Not Conserved
7mer
1694-1719
0.001
Not Conserved
7mer
867-884
0.001
Not Conserved
7mer
2665-2682
0.001
0
6mer
1611-1624
0.000
Not Conserved
LOXL1-AS1
hsa-miR-28-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564194
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-542
0.011
1
7mer
2270-2287
0.007
2
8mer
2111-2133
0.006
1
6mer
1524-1547
0.004
1
6mer
684-697
0.004
1
6mer
967-989
0.003
1
6mer
881-901
0.002
Not Conserved
XLOC_001363
hsa-miR-28-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003586
Biotype: transcript isomorph
Gene id: XLOC_001363
Gene Name: XLOC_001363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-41
0.018
2
8mer
250-269
0.013
1
6mer
231-249
0.004
1
LINC00442
hsa-miR-28-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456737
Biotype: antisense
Gene id: ENSG00000232685
Gene Name: LINC00442
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
645-660
0.007
1
7mer
872-890
0.007
1
6mer
1957-1973
0.006
0
6mer
494-519
0.006
1
6mer
413-432
0.005
0
6mer
1266-1288
0.003
0
CTB-114C7.4
hsa-miR-28-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511921
Biotype: lincRNA
Gene id: ENSG00000250274
Gene Name: CTB-114C7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-273
0.015
1
7mer
1957-1976
0.011
1
7mer
976-994
0.006
1
6mer
622-642
0.004
1
XLOC_006954
hsa-miR-28-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014884
Biotype: transcript isomorph
Gene id: XLOC_006954
Gene Name: XLOC_006954
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
447-451
0.019
0
6mer
262-284
0.017
0
XLOC_009499
hsa-miR-28-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019701
Biotype: transcript isomorph
Gene id: XLOC_009499
Gene Name: XLOC_009499
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1379-1399
0.019
3
8mer+wobble
575-590
0.008
3
6mer
316-341
0.005
4
6mer
983-997
0.003
3
LOC648987
hsa-miR-28-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034085.1
Biotype: lincRNA
Gene id: NR_034085.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1266-1291
0.013
1
9mer
220-233
0.012
0
6mer
790-806
0.005
1
6mer
644-656
0.004
0
RP11-1217F2.15
hsa-miR-28-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415836
Biotype: lincRNA
Gene id: ENSG00000234089
Gene Name: RP11-1217F2.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-35
0.020
0
7mer
62-80
0.009
0
6mer
376-391
0.006
0
CTD-3105H18.13
hsa-miR-28-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000563695
Biotype: lincRNA
Gene id: ENSG00000261280
Gene Name: CTD-3105H18.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1465-1483
0.035
1
RP11-166O4.6
hsa-miR-28-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609770
Biotype: lincRNA
Gene id: ENSG00000273448
Gene Name: RP11-166O4.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1056-1074
0.032
2
6mer
570-596
0.003
1
RP11-175O19.4
hsa-miR-28-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421806
Biotype: antisense
Gene id: ENSG00000231025
Gene Name: RP11-175O19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2379-2401
0.028
8
7mer
1549-1570
0.003
1
6mer
458-480
0.002
Not Conserved
6mer
2868-2891
0.002
1
AC016907.3
hsa-miR-28-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455424
Biotype: antisense
Gene id: ENSG00000233862
Gene Name: AC016907.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1112-1126
0.025
2
6mer
2411-2437
0.005
3
6mer
2039-2055
0.002
1
7mer
1999-2021
0.001
2
6mer
1901-1923
0.001
0
6mer
2032-2055
0.001
Not Conserved
RP1-178F15.4
hsa-miR-28-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000469931
Biotype: antisense
Gene id: ENSG00000272030
Gene Name: RP1-178F15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-88
0.025
4
6mer
753-767
0.005
7
7mer
797-823
0.003
Not Conserved
7mer
634-659
0.002
0
PART1
hsa-miR-28-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515734
Biotype: lincRNA
Gene id: ENSG00000152931
Gene Name: PART1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
410-425
0.031
9
6mer
853-875
0.004
2
RP11-35O15.2
hsa-miR-28-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000618697
Biotype: sense_intronic
Gene id: ENSG00000278022
Gene Name: RP11-35O15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-82
0.022
1
8mer
143-158
0.013
0
RP11-744K17.1
hsa-miR-28-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562182
Biotype: lincRNA
Gene id: ENSG00000261020
Gene Name: RP11-744K17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2656-2677
0.010
1
6mer
617-628
0.010
1
7mer
1730-1749
0.006
1
6mer
4048-4073
0.005
0
6mer
2274-2297
0.004
1
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