LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-28-5p


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Gene
miRNA
Score
DIANA Links
XLOC_004497
hsa-miR-28-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010757
Biotype: transcript isomorph
Gene id: XLOC_004497
Gene Name: XLOC_004497
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-206
0.037
4
INTS6-AS1
hsa-miR-28-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608520
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-354
0.037
1
CTD-2561B21.11
hsa-miR-28-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572036
Biotype: lincRNA
Gene id: ENSG00000262873
Gene Name: CTD-2561B21.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
838-852
0.037
0
RP11-91K9.1
hsa-miR-28-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436078
Biotype: lincRNA
Gene id: ENSG00000231574
Gene Name: RP11-91K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2930-2944
0.035
1
6mer
1800-1825
0.002
0
RP11-344N10.5
hsa-miR-28-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608005
Biotype: lincRNA
Gene id: ENSG00000272630
Gene Name: RP11-344N10.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2248-2270
0.037
1
XLOC_000191
hsa-miR-28-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000939
Biotype: transcript isomorph
Gene id: XLOC_000191
Gene Name: XLOC_000191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
672-691
0.030
1
6mer
636-655
0.007
0
RP11-37B2.1
hsa-miR-28-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519655
Biotype: lincRNA
Gene id: ENSG00000251136
Gene Name: RP11-37B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-286
0.018
1
9mer
1236-1260
0.011
0
6mer
11-35
0.005
0
6mer
1105-1119
0.003
0
LINC01001
hsa-miR-28-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_028326.1
Biotype: lincRNA
Gene id: NR_028326.1 (gene)
Gene Name: LINC01001
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-350
0.008
0
7mer
577-594
0.003
0
7mer
4193-4210
0.003
0
7mer
2789-2807
0.003
0
6mer
4384-4404
0.003
Not Conserved
7mer
4098-4115
0.002
Not Conserved
7mer
300-317
0.002
Not Conserved
7mer
3937-3963
0.002
Not Conserved
7mer
966-982
0.002
Not Conserved
7mer
3038-3063
0.002
Not Conserved
8mer
2432-2456
0.001
Not Conserved
7mer
3615-3641
0.001
Not Conserved
7mer
3256-3273
0.001
Not Conserved
7mer
2035-2060
0.001
Not Conserved
7mer
867-884
0.001
Not Conserved
7mer
3006-3023
0.001
0
6mer
1952-1965
0.000
Not Conserved
MALAT1
hsa-miR-28-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000508832
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
607-623
0.037
8
GS1-72M22.1
hsa-miR-28-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607058
Biotype: antisense
Gene id: ENSG00000272163
Gene Name: GS1-72M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2186-2199
0.010
9
6mer
2009-2019
0.010
11
7mer
1934-1955
0.009
11
6mer
313-332
0.004
1
6mer
1090-1111
0.002
1
6mer
988-1007
0.001
Not Conserved
RP11-627G23.1
hsa-miR-28-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532886
Biotype: retained_intron
Gene id: ENSG00000255545
Gene Name: RP11-627G23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4243-4259
0.025
0
8mer
2745-2759
0.004
0
7mer
1097-1116
0.004
1
7mer
3463-3477
0.002
1
6mer
1145-1166
0.001
Not Conserved
6mer
2865-2882
0.000
Not Conserved
FAM224A
hsa-miR-28-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000419557
Biotype: lincRNA
Gene id: ENSG00000233522
Gene Name: FAM224A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
428-454
0.016
0
6mer
1326-1339
0.013
0
6mer
480-506
0.007
0
XLOC_004126
hsa-miR-28-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008625
Biotype: transcript isomorph
Gene id: XLOC_004126
Gene Name: XLOC_004126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-72
0.036
3
CTD-2162K18.3
hsa-miR-28-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588717
Biotype: lincRNA
Gene id: ENSG00000267353
Gene Name: CTD-2162K18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
578-594
0.036
1
CITF22-24E5.1
hsa-miR-28-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000417792
Biotype: antisense
Gene id: ENSG00000234979
Gene Name: CITF22-24E5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-199
0.023
5
7mer
237-249
0.008
3
6mer
356-374
0.005
1
XLOC_008993
hsa-miR-28-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018642
Biotype: transcript isomorph
Gene id: XLOC_008993
Gene Name: XLOC_008993
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
233-258
0.016
1
6mer
44-48
0.009
3
6mer
341-366
0.007
3
6mer
483-508
0.005
1
RP1-29C18.10
hsa-miR-28-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000391625
Biotype: lincRNA
Gene id: ENSG00000212939
Gene Name: RP1-29C18.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-47
0.018
1
7mer
3311-3328
0.007
1
7mer
596-618
0.006
1
6mer
3358-3374
0.002
0
6mer
1295-1320
0.002
1
8mer+wobble
3117-3142
0.002
Not Conserved
TPTEP1
hsa-miR-28-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000400593
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1315-1332
0.036
0
RP3-340N1.2
hsa-miR-28-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417884
Biotype: lincRNA
Gene id: ENSG00000227066
Gene Name: RP3-340N1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1037-1054
0.033
1
6mer
106-123
0.002
Not Conserved
RP11-480I12.7
hsa-miR-28-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456105
Biotype: lincRNA
Gene id: ENSG00000234996
Gene Name: RP11-480I12.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-28-5p
Sequence: aaggagcucacagucuauugag
MirBase ID: MIMAT0000085
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2065-2087
0.015
1
7mer
179-199
0.012
0
6mer
109-129
0.003
0
6mer
1719-1745
0.003
0
6mer
345-360
0.002
1
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