LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
DAB1-AS1
hsa-miR-223-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416598
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
801-808
0.025
1
RP11-422J15.1
hsa-miR-223-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513875
Biotype: lincRNA
Gene id: ENSG00000249618
Gene Name: RP11-422J15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1173-1186
0.011
1
7mer
460-470
0.011
1
6mer
402-417
0.003
1
RP11-902B17.1
hsa-miR-223-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000500036
Biotype: antisense
Gene id: ENSG00000247287
Gene Name: RP11-902B17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3045-3064
0.025
1
LIMD1-AS1
hsa-miR-223-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000429798
Biotype: antisense
Gene id: ENSG00000230530
Gene Name: LIMD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
91-101
0.025
1
AC007740.1
hsa-miR-223-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446838
Biotype: antisense
Gene id: ENSG00000237750
Gene Name: AC007740.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
542-567
0.019
0
6mer
322-349
0.004
1
6mer
633-659
0.002
2
AC022486.1
hsa-miR-223-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000510613
Biotype: lincRNA
Gene id: ENSG00000251510
Gene Name: AC022486.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-144
0.025
0
RP11-650L12.2
hsa-miR-223-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567141
Biotype: antisense
Gene id: ENSG00000261762
Gene Name: RP11-650L12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
446-453
0.025
1
RP11-1024P17.1
hsa-miR-223-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000561507
Biotype: sense_overlapping
Gene id: ENSG00000261468
Gene Name: RP11-1024P17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1529-1556
0.021
1
6mer
1825-1843
0.004
1
RP11-272D20.2
hsa-miR-223-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000427258
Biotype: antisense
Gene id: ENSG00000235845
Gene Name: RP11-272D20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
504-531
0.025
1
RP11-160N1.9
hsa-miR-223-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000419207
Biotype: lincRNA
Gene id: ENSG00000231248
Gene Name: RP11-160N1.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
468-495
0.019
3
6mer
213-233
0.006
1
SMAD5-AS1
hsa-miR-223-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_026763.1
Biotype: antisense
Gene id: NR_026763.1 (gene)
Gene Name: SMAD5-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
473-487
0.025
1
LRRC75A-AS1
hsa-miR-223-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578757
Biotype: retained_intron
Gene id: ENSG00000175061
Gene Name: LRRC75A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
605-616
0.025
8
MIR17HG
hsa-miR-223-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000581816
Biotype: lincRNA
Gene id: ENSG00000215417
Gene Name: MIR17HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1193-1203
0.025
11
SMAD5-AS1
hsa-miR-223-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000297163
Biotype: antisense
Gene id: ENSG00000164621
Gene Name: SMAD5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
479-493
0.025
1
CTC-558O19.1
hsa-miR-223-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503710
Biotype: antisense
Gene id: ENSG00000249545
Gene Name: CTC-558O19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-93
0.025
0
AC097467.2
hsa-miR-223-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000597831
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-49
0.025
2
CTC-529P8.1
hsa-miR-223-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515519
Biotype: lincRNA
Gene id: ENSG00000250072
Gene Name: CTC-529P8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
643-661
0.016
1
6mer
121-126
0.004
1
6mer
128-141
0.004
2
FLJ31356
hsa-miR-223-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445878
Biotype: antisense
Gene id: ENSG00000229951
Gene Name: FLJ31356
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1990-2003
0.021
0
6mer
234-254
0.003
0
RP11-81H3.2
hsa-miR-223-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551210
Biotype: lincRNA
Gene id: ENSG00000251138
Gene Name: RP11-81H3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
154-172
0.020
0
6mer
403-420
0.005
0
RP4-625H18.2
hsa-miR-223-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607233
Biotype: lincRNA
Gene id: ENSG00000228412
Gene Name: RP4-625H18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-167
0.025
1
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