LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
XLOC_008428
hsa-miR-223-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018149
Biotype: transcript isomorph
Gene id: XLOC_008428
Gene Name: XLOC_008428
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1518-1543
0.023
1
6mer
1226-1233
0.003
0
CTA-342B11.3
hsa-miR-223-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9219-9239
0.015
0
7mer
17860-17873
0.003
1
7mer
22177-22199
0.003
Not Conserved
6mer
16196-16201
0.002
Not Conserved
6mer
14075-14091
0.002
0
6mer
4189-4207
0.001
1
6mer
8732-8736
0.001
0
NAV2-AS4
hsa-miR-223-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033989.1
Biotype: antisense
Gene id: NR_033989.1 (gene)
Gene Name: NAV2-AS4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
262-271
0.016
1
7mer
970-986
0.006
1
6mer
250-265
0.003
1
XLOC_004415
hsa-miR-223-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009989
Biotype: transcript isomorph
Gene id: XLOC_004415
Gene Name: XLOC_004415
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
707-717
0.026
1
RP11-513G19.1
hsa-miR-223-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535324
Biotype: antisense
Gene id: ENSG00000255968
Gene Name: RP11-513G19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
658-679
0.026
0
AC097467.2
hsa-miR-223-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000600928
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-40
0.026
2
RP11-42I10.1
hsa-miR-223-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564212
Biotype: lincRNA
Gene id: ENSG00000260086
Gene Name: RP11-42I10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
330-345
0.026
1
XLOC_007800
hsa-miR-223-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016434
Biotype: transcript isomorph
Gene id: XLOC_007800
Gene Name: XLOC_007800
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4025-4052
0.016
1
7mer
3742-3767
0.008
0
6mer
1411-1426
0.002
1
KB-1183D5.13
hsa-miR-223-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000411581
Biotype: lincRNA
Gene id: ENSG00000206142
Gene Name: KB-1183D5.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-298
0.026
0
GNG12-AS1
hsa-miR-223-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413628
Biotype: antisense
Gene id: ENSG00000232284
Gene Name: GNG12-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1443-1469
0.018
2
6mer
536-554
0.004
1
6mer
782-799
0.003
1
SERTAD4-AS1
hsa-miR-223-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_024337.1
Biotype: antisense
Gene id: NR_024337.1 (gene)
Gene Name: SERTAD4-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-98
0.026
6
SLC7A11-AS1
hsa-miR-223-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510767
Biotype: antisense
Gene id: ENSG00000250033
Gene Name: SLC7A11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2998-3014
0.016
2
6mer
592-601
0.005
4
6mer
4177-4204
0.003
4
6mer
3617-3623
0.002
0
AC005154.6
hsa-miR-223-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000582145
Biotype: antisense
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
79-102
0.021
1
6mer
47-73
0.004
0
MIR600HG
hsa-miR-223-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000449175
Biotype: sense_intronic
Gene id: ENSG00000236901
Gene Name: MIR600HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2240-2263
0.011
1
6mer
59-79
0.009
6
7mer
5195-5217
0.005
1
6mer
3375-3392
0.000
0
XLOC_008269
hsa-miR-223-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017391
Biotype: transcript isomorph
Gene id: XLOC_008269
Gene Name: XLOC_008269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-172
0.021
0
6mer
114-131
0.005
0
GNG12-AS1
hsa-miR-223-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420587
Biotype: antisense
Gene id: ENSG00000232284
Gene Name: GNG12-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1617-1643
0.018
2
6mer
552-570
0.004
1
6mer
802-819
0.003
1
RP11-92C4.3
hsa-miR-223-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590999
Biotype: antisense
Gene id: ENSG00000267026
Gene Name: RP11-92C4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-60
0.017
2
7mer
332-352
0.008
1
OR2A1-AS1
hsa-miR-223-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000476560
Biotype: antisense
Gene id: ENSG00000244479
Gene Name: OR2A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
454-473
0.025
0
RP11-504A18.1
hsa-miR-223-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569425
Biotype: lincRNA
Gene id: ENSG00000260971
Gene Name: RP11-504A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
293-306
0.025
1
LINC00167
hsa-miR-223-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530583
Biotype: lincRNA
Gene id: ENSG00000233220
Gene Name: LINC00167
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
977-1001
0.013
1
8mer
16-29
0.012
3
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