LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
RP11-97O12.6
hsa-miR-223-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000606927
Biotype: sense_intronic
Gene id: ENSG00000271997
Gene Name: RP11-97O12.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3381-3400
0.019
2
8mer
1628-1644
0.008
0
RP11-310E22.5
hsa-miR-223-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000422744
Biotype: lincRNA
Gene id: ENSG00000231829
Gene Name: RP11-310E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
189-202
0.016
1
8mer+wobble
307-326
0.010
Not Conserved
CTA-929C8.9
hsa-miR-223-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8218-8241
0.009
1
7mer
11126-11140
0.003
1
6mer
24707-24722
0.003
0
6mer
18139-18154
0.002
5
6mer
5858-5880
0.002
1
6mer
5031-5054
0.002
3
7mer
15564-15573
0.002
0
6mer
11444-11467
0.002
0
6mer
20191-20212
0.001
0
XLOC_012138
hsa-miR-223-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025860
Biotype: transcript isomorph
Gene id: XLOC_012138
Gene Name: XLOC_012138
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
589-615
0.014
0
6mer
680-697
0.012
0
OR2A1-AS1
hsa-miR-223-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000487102
Biotype: antisense
Gene id: ENSG00000244479
Gene Name: OR2A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
445-464
0.026
0
XLOC_012537
hsa-miR-223-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025711
Biotype: transcript isomorph
Gene id: XLOC_012537
Gene Name: XLOC_012537
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1960-1976
0.013
1
7mer
2120-2125
0.010
0
6mer
2039-2059
0.004
2
LINC00484
hsa-miR-223-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000609752
Biotype: lincRNA
Gene id: ENSG00000235641
Gene Name: LINC00484
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-215
0.026
1
XLOC_010588
hsa-miR-223-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021986
Biotype: transcript isomorph
Gene id: XLOC_010588
Gene Name: XLOC_010588
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
10-25
0.008
4
7mer
2505-2531
0.006
1
7mer
2426-2450
0.006
0
6mer
1954-1972
0.002
2
6mer
808-823
0.002
0
6mer
1893-1897
0.001
1
RP11-272L13.3
hsa-miR-223-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602672
Biotype: lincRNA
Gene id: ENSG00000269998
Gene Name: RP11-272L13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
532-550
0.013
0
7mer
828-836
0.013
0
AC110769.3
hsa-miR-223-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420161
Biotype: lincRNA
Gene id: ENSG00000243179
Gene Name: AC110769.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
718-731
0.023
1
6mer
514-529
0.003
0
RP11-14C22.6
hsa-miR-223-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416310
Biotype: lincRNA
Gene id: ENSG00000230720
Gene Name: RP11-14C22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
329-346
0.026
5
RP11-111F5.4
hsa-miR-223-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377518
Biotype: retained_intron
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
148-158
0.017
0
6mer
1977-1997
0.009
0
TRAF3IP2-AS1
hsa-miR-223-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000531702
Biotype: antisense
Gene id: ENSG00000255389
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
920-927
0.020
1
6mer
2360-2373
0.004
1
6mer
1216-1230
0.001
1
XLOC_008461
hsa-miR-223-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017672
Biotype: transcript isomorph
Gene id: XLOC_008461
Gene Name: XLOC_008461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-45
0.013
0
7mer
4297-4314
0.001
Not Conserved
6mer
3562-3579
0.001
Not Conserved
6mer
4150-4167
0.001
0
6mer
4052-4069
0.001
0
6mer
4101-4118
0.001
0
6mer
4003-4020
0.001
0
6mer
4199-4216
0.001
0
6mer
4589-4606
0.001
Not Conserved
6mer
4248-4265
0.001
0
6mer
3807-3824
0.001
Not Conserved
6mer
3758-3775
0.000
Not Conserved
6mer
3660-3677
0.000
Not Conserved
6mer
4647-4655
0.000
Not Conserved
6mer
3954-3971
0.000
Not Conserved
6mer
4395-4412
0.000
Not Conserved
6mer
3905-3922
0.000
Not Conserved
6mer
3856-3873
0.000
Not Conserved
6mer
4346-4363
0.000
Not Conserved
6mer
3611-3628
0.000
Not Conserved
6mer
4444-4461
0.000
Not Conserved
6mer
3709-3726
0.000
Not Conserved
6mer
4491-4508
0.000
Not Conserved
XLOC_000638
hsa-miR-223-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001347
Biotype: transcript isomorph
Gene id: XLOC_000638
Gene Name: XLOC_000638
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-30
0.026
2
RP1-269M15.3
hsa-miR-223-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000611791
Biotype: lincRNA
Gene id: ENSG00000233508
Gene Name: RP1-269M15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1649-1657
0.025
2
6mer
1082-1109
0.001
Not Conserved
TTN-AS1
hsa-miR-223-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587944
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-78
0.018
6
6mer
474-485
0.005
4
6mer
778-793
0.004
1
XLOC_002829
hsa-miR-223-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006236
Biotype: transcript isomorph
Gene id: XLOC_002829
Gene Name: XLOC_002829
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-123
0.026
2
RP11-439E19.9
hsa-miR-223-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000570141
Biotype: lincRNA
Gene id: ENSG00000260698
Gene Name: RP11-439E19.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2480-2489
0.022
1
6mer
538-550
0.003
0
6mer
1330-1349
0.001
0
RP11-474P2.6
hsa-miR-223-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621248
Biotype: lincRNA
Gene id: ENSG00000275481
Gene Name: RP11-474P2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-195
0.021
0
6mer
2639-2651
0.002
2
6mer
2333-2341
0.002
2
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