LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
LINC00824
hsa-miR-223-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520766
Biotype: lincRNA
Gene id: ENSG00000254275
Gene Name: LINC00824
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-346
0.027
0
LRRC75A-AS1
hsa-miR-223-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581913
Biotype: antisense
Gene id: ENSG00000175061
Gene Name: LRRC75A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
368-379
0.027
8
XLOC_002128
hsa-miR-223-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005168
Biotype: transcript isomorph
Gene id: XLOC_002128
Gene Name: XLOC_002128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
801-824
0.027
1
AC093110.3
hsa-miR-223-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456363
Biotype: antisense
Gene id: ENSG00000238018
Gene Name: AC093110.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-85
0.019
1
7mer
348-366
0.007
Not Conserved
AF127577.11
hsa-miR-223-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000436429
Biotype: antisense
Gene id: ENSG00000231201
Gene Name: AF127577.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
124-140
0.027
1
NAV2-AS4
hsa-miR-223-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532874
Biotype: antisense
Gene id: ENSG00000254622
Gene Name: NAV2-AS4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
265-274
0.016
1
7mer
973-989
0.007
1
6mer
253-268
0.003
1
XLOC_006933
hsa-miR-223-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014864
Biotype: transcript isomorph
Gene id: XLOC_006933
Gene Name: XLOC_006933
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1354-1367
0.024
1
6mer
2487-2505
0.002
1
RP11-554A11.4
hsa-miR-223-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000562276
Biotype: sense_overlapping
Gene id: ENSG00000261625
Gene Name: RP11-554A11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-28
0.027
1
AC098617.1
hsa-miR-223-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609952
Biotype: antisense
Gene id: ENSG00000233766
Gene Name: AC098617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
852-863
0.021
0
6mer
720-745
0.005
2
ALMS1-IT1
hsa-miR-223-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046762.1
Biotype: sense
Gene id: NR_046762.1 (gene)
Gene Name: ALMS1-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1396-1405
0.027
1
XLOC_005989
hsa-miR-223-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013350
Biotype: transcript isomorph
Gene id: XLOC_005989
Gene Name: XLOC_005989
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
217-229
0.013
10
6mer
222-239
0.013
11
ARRDC1-AS1
hsa-miR-223-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000623970
Biotype: antisense
Gene id: ENSG00000203993
Gene Name: ARRDC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
687-701
0.021
0
7mer
1360-1380
0.005
0
RP11-160E2.17
hsa-miR-223-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000439868
Biotype: lincRNA
Gene id: ENSG00000230197
Gene Name: RP11-160E2.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-341
0.026
1
RP11-221J22.1
hsa-miR-223-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465215
Biotype: lincRNA
Gene id: ENSG00000214407
Gene Name: RP11-221J22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1851-1868
0.013
1
6mer
300-321
0.008
6
7mer
1224-1234
0.006
1
ARRDC1-AS1
hsa-miR-223-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000371417
Biotype: antisense
Gene id: ENSG00000203993
Gene Name: ARRDC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
722-736
0.019
0
7mer
916-936
0.007
0
LINC01227
hsa-miR-223-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567317
Biotype: lincRNA
Gene id: ENSG00000260737
Gene Name: LINC01227
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-216
0.024
3
6mer
563-567
0.003
0
RP11-160E2.16
hsa-miR-223-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000447506
Biotype: lincRNA
Gene id: ENSG00000236022
Gene Name: RP11-160E2.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-341
0.026
1
MEF2C-AS1
hsa-miR-223-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508742
Biotype: antisense
Gene id: ENSG00000248309
Gene Name: MEF2C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
592-608
0.026
2
NTRK3-AS1
hsa-miR-223-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569588
Biotype: lincRNA
Gene id: ENSG00000260305
Gene Name: NTRK3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2075-2098
0.018
1
7mer
564-574
0.003
Not Conserved
6mer
1177-1199
0.002
0
7mer
1330-1344
0.001
1
6mer
1445-1464
0.001
2
6mer
1220-1236
0.001
1
XLOC_006323
hsa-miR-223-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014243
Biotype: transcript isomorph
Gene id: XLOC_006323
Gene Name: XLOC_006323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-235
0.026
1
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