LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-223-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-575F12.3
hsa-miR-223-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617117
Biotype: lincRNA
Gene id: ENSG00000278266
Gene Name: RP11-575F12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
845-855
0.020
1
6mer
213-226
0.007
2
XLOC_013553
hsa-miR-223-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028205
Biotype: transcript isomorph
Gene id: XLOC_013553
Gene Name: XLOC_013553
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3358-3369
0.012
0
7mer
250-262
0.011
0
8mer
3865-3876
0.005
Not Conserved
XLOC_006658
hsa-miR-223-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014011
Biotype: transcript isomorph
Gene id: XLOC_006658
Gene Name: XLOC_006658
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
506-527
0.028
0
SERTAD4-AS1
hsa-miR-223-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437764
Biotype: antisense
Gene id: ENSG00000203706
Gene Name: SERTAD4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-101
0.028
6
RP11-412D9.4
hsa-miR-223-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000570282
Biotype: antisense
Gene id: ENSG00000260329
Gene Name: RP11-412D9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-78
0.017
1
7mer
510-536
0.007
Not Conserved
7mer
1312-1320
0.004
0
TUG1
hsa-miR-223-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000602393
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1837-1861
0.020
5
6mer
498-515
0.005
6
6mer
712-720
0.002
Not Conserved
RP11-1084E5.1
hsa-miR-223-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522244
Biotype: antisense
Gene id: ENSG00000253796
Gene Name: RP11-1084E5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-177
0.027
5
RP11-221J22.2
hsa-miR-223-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000483840
Biotype: lincRNA
Gene id: ENSG00000241280
Gene Name: RP11-221J22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1688-1705
0.013
1
6mer
137-158
0.008
6
7mer
1061-1071
0.006
1
TPTEP1
hsa-miR-223-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000383140
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
364-390
0.016
0
6mer
244-255
0.008
1
6mer
113-122
0.003
Not Conserved
SLCO4A1-AS1
hsa-miR-223-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000433126
Biotype: antisense
Gene id: ENSG00000232803
Gene Name: SLCO4A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
660-676
0.021
1
6mer
1049-1071
0.003
0
6mer
1291-1309
0.003
0
RP5-827C21.6
hsa-miR-223-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610233
Biotype: antisense
Gene id: ENSG00000273367
Gene Name: RP5-827C21.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-294
0.021
0
6mer
561-578
0.006
1
XLOC_000843
hsa-miR-223-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001500
Biotype: transcript isomorph
Gene id: XLOC_000843
Gene Name: XLOC_000843
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-332
0.027
1
FLJ31356
hsa-miR-223-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427929
Biotype: antisense
Gene id: ENSG00000229951
Gene Name: FLJ31356
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1990-2003
0.024
0
6mer
234-254
0.003
0
AC008269.2
hsa-miR-223-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438070
Biotype: lincRNA
Gene id: ENSG00000229321
Gene Name: AC008269.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
616-631
0.027
1
AF131216.6
hsa-miR-223-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000498997
Biotype: antisense
Gene id: ENSG00000246477
Gene Name: AF131216.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
927-937
0.011
3
6mer
202-217
0.009
6
6mer
5452-5466
0.004
3
7mer
1414-1424
0.001
Not Conserved
6mer
1554-1565
0.001
Not Conserved
6mer
2391-2404
0.001
1
FGF14-IT1
hsa-miR-223-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437115
Biotype: sense_intronic
Gene id: ENSG00000243319
Gene Name: FGF14-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
560-575
0.027
4
RP11-531F16.4
hsa-miR-223-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608000
Biotype: antisense
Gene id: ENSG00000273261
Gene Name: RP11-531F16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
300-311
0.027
4
RP11-102L12.2
hsa-miR-223-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560231
Biotype: antisense
Gene id: ENSG00000259326
Gene Name: RP11-102L12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-175
0.021
1
6mer
2036-2060
0.006
1
RP11-93B14.5
hsa-miR-223-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_024470.1
Biotype: antisense
Gene id: NR_024470.1 (gene)
Gene Name: RP11-93B14.5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
664-680
0.020
1
6mer
1053-1075
0.003
0
6mer
1295-1313
0.003
0
XLOC_004231
hsa-miR-223-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008717
Biotype: transcript isomorph
Gene id: XLOC_004231
Gene Name: XLOC_004231
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-234
0.012
0
7mer
47-59
0.011
0
6mer
164-176
0.004
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept