LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
LOC148696
hsa-miR-223-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_026817.1
Biotype: lincRNA
Gene id: NR_026817.1 (gene)
Gene Name: LOC148696
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3705-3713
0.017
3
6mer
1005-1013
0.004
6
6mer
3754-3758
0.004
2
6mer
809-832
0.002
4
6mer
2596-2621
0.001
1
RP11-565N2.2
hsa-miR-223-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000567538
Biotype: lincRNA
Gene id: ENSG00000259815
Gene Name: RP11-565N2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-22
0.028
1
RP11-69G7.1
hsa-miR-223-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560238
Biotype: lincRNA
Gene id: ENSG00000259672
Gene Name: RP11-69G7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-439
0.028
1
C10orf40
hsa-miR-223-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444900
Biotype: lincRNA
Gene id: ENSG00000235931
Gene Name: C10orf40
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-57
0.028
1
DAB1-AS1
hsa-miR-223-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434141
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
584-591
0.028
1
AP000469.2
hsa-miR-223-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000416218
Biotype: lincRNA
Gene id: ENSG00000224832
Gene Name: AP000469.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1243-1263
0.026
3
6mer
1236-1258
0.002
0
RP11-108M9.3
hsa-miR-223-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451828
Biotype: lincRNA
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
257-272
0.028
1
DAB1-AS1
hsa-miR-223-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000591523
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-307
0.028
1
CTD-3023L14.1
hsa-miR-223-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524073
Biotype: lincRNA
Gene id: ENSG00000253774
Gene Name: CTD-3023L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
416-439
0.028
1
RP11-973H7.3
hsa-miR-223-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585877
Biotype: sense_intronic
Gene id: ENSG00000267249
Gene Name: RP11-973H7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
564-576
0.028
3
TPTEP1
hsa-miR-223-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000588424
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-67
0.020
0
6mer
676-696
0.008
1
NRG1-IT1
hsa-miR-223-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_104157.1
Biotype: sense
Gene id: NR_104157.1 (gene)
Gene Name: NRG1-IT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
369-384
0.028
0
DAB1-AS1
hsa-miR-223-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000590080
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-307
0.028
1
MYT1L-AS1
hsa-miR-223-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000448106
Biotype: antisense
Gene id: ENSG00000225619
Gene Name: MYT1L-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2424-2436
0.008
5
6mer
201-211
0.008
4
6mer
72-84
0.007
6
6mer
390-402
0.005
4
XLOC_011568
hsa-miR-223-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023283
Biotype: transcript isomorph
Gene id: XLOC_011568
Gene Name: XLOC_011568
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3381-3403
0.020
2
8mer
1628-1644
0.007
0
RP11-35J10.6
hsa-miR-223-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000612456
Biotype: sense_intronic
Gene id: ENSG00000275612
Gene Name: RP11-35J10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-362
0.028
1
XLOC_010109
hsa-miR-223-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020821
Biotype: transcript isomorph
Gene id: XLOC_010109
Gene Name: XLOC_010109
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4732-4751
0.016
1
6mer
299-311
0.004
1
7mer
3619-3633
0.003
1
6mer
3263-3278
0.002
1
7mer
2591-2612
0.002
0
6mer
3129-3141
0.001
3
6mer
3235-3258
0.001
0
RP11-256L11.3
hsa-miR-223-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539987
Biotype: antisense
Gene id: ENSG00000255655
Gene Name: RP11-256L11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-87
0.024
2
7mer
267-285
0.004
0
RP11-307E17.8
hsa-miR-223-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000454869
Biotype: lincRNA
Gene id: ENSG00000232063
Gene Name: RP11-307E17.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1553-1576
0.028
0
KCNIP2-AS1
hsa-miR-223-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000412353
Biotype: antisense
Gene id: ENSG00000226009
Gene Name: KCNIP2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
464-470
0.028
9
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