LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-223-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
DAB1-AS1
hsa-miR-223-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000588058
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-307
0.029
1
RP3-340N1.2
hsa-miR-223-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431027
Biotype: lincRNA
Gene id: ENSG00000227066
Gene Name: RP3-340N1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1875-1891
0.022
1
6mer
685-710
0.007
0
RP11-340I6.7
hsa-miR-223-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000587736
Biotype: lincRNA
Gene id: ENSG00000236299
Gene Name: RP11-340I6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-9
0.029
0
SERTAD4-AS1
hsa-miR-223-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000475406
Biotype: antisense
Gene id: ENSG00000203706
Gene Name: SERTAD4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-101
0.028
6
LOC100289511
hsa-miR-223-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_029378.1
Biotype: antisense
Gene id: NR_029378.1 (gene)
Gene Name: LOC100289511
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
860-868
0.027
10
6mer
708-729
0.002
0
RP11-403I13.7
hsa-miR-223-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424684
Biotype: lincRNA
Gene id: ENSG00000263590
Gene Name: RP11-403I13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4764-4772
0.018
1
8mer
1183-1198
0.006
0
6mer
456-481
0.003
0
6mer
786-810
0.002
1
RP11-171I2.1
hsa-miR-223-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590024
Biotype: antisense
Gene id: ENSG00000267784
Gene Name: RP11-171I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
526-550
0.017
7
6mer
382-398
0.012
12
XLOC_010390
hsa-miR-223-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021490
Biotype: transcript isomorph
Gene id: XLOC_010390
Gene Name: XLOC_010390
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3319-3340
0.024
Not Conserved
8mer
1334-1361
0.004
1
XLOC_001313
hsa-miR-223-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004663
Biotype: transcript isomorph
Gene id: XLOC_001313
Gene Name: XLOC_001313
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
597-611
0.018
0
7mer
126-139
0.010
0
RP11-661P17.1
hsa-miR-223-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000555947
Biotype: lincRNA
Gene id: ENSG00000258551
Gene Name: RP11-661P17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
507-531
0.028
2
FLJ41278
hsa-miR-223-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535058
Biotype: lincRNA
Gene id: ENSG00000255693
Gene Name: FLJ41278
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3163-3169
0.025
0
6mer
410-426
0.003
1
CTC-523E23.11
hsa-miR-223-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000603718
Biotype: lincRNA
Gene id: ENSG00000271109
Gene Name: CTC-523E23.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-170
0.028
0
ERVH48-1
hsa-miR-223-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447535
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
488-504
0.013
0
8mer
2462-2481
0.008
Not Conserved
6mer
1210-1230
0.007
0
GRID1-AS1
hsa-miR-223-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038986.1
Biotype: antisense
Gene id: NR_038986.1 (gene)
Gene Name: GRID1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1865-1873
0.028
10
LRRC75A-AS1
hsa-miR-223-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000480811
Biotype: antisense
Gene id: ENSG00000175061
Gene Name: LRRC75A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
217-228
0.028
8
LINC00930
hsa-miR-223-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557075
Biotype: lincRNA
Gene id: ENSG00000258647
Gene Name: LINC00930
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1487-1508
0.015
1
7mer
1492-1508
0.011
2
6mer
527-546
0.002
0
CTC-273B12.5
hsa-miR-223-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600650
Biotype: antisense
Gene id: ENSG00000268530
Gene Name: CTC-273B12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
302-314
0.028
1
AC097467.2
hsa-miR-223-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608544
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
722-727
0.024
2
6mer
78-101
0.004
1
AC006380.3
hsa-miR-223-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000433356
Biotype: lincRNA
Gene id: ENSG00000231418
Gene Name: AC006380.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
323-333
0.028
3
XLOC_006879
hsa-miR-223-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014803
Biotype: transcript isomorph
Gene id: XLOC_006879
Gene Name: XLOC_006879
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-281
0.018
0
6mer
503-507
0.006
1
6mer
67-84
0.003
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept