LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
RP11-941H19.3
hsa-miR-223-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522044
Biotype: lincRNA
Gene id: ENSG00000253238
Gene Name: RP11-941H19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
395-404
0.029
2
UG0898H09
hsa-miR-223-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000623646
Biotype: lincRNA
Gene id: ENSG00000274956
Gene Name: UG0898H09
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5135-5150
0.017
1
7mer
6318-6333
0.007
1
6mer
3642-3655
0.002
3
6mer
5916-5926
0.002
1
6mer
4761-4774
0.002
1
6mer
5147-5172
0.000
Not Conserved
RP11-3G20.2
hsa-miR-223-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000458107
Biotype: lincRNA
Gene id: ENSG00000248478
Gene Name: RP11-3G20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-156
0.029
1
TTC28-AS1
hsa-miR-223-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000433317
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2647-2658
0.010
1
7mer
2099-2108
0.009
1
7mer
1212-1234
0.007
1
6mer
914-923
0.002
0
6mer
672-691
0.001
0
CTA-292E10.9
hsa-miR-223-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23951-23971
0.010
1
7mer
24267-24277
0.009
0
7mer
11211-11233
0.004
4
6mer
13069-13079
0.002
1
6mer
2336-2361
0.002
5
6mer
16547-16555
0.002
2
XLOC_004269
hsa-miR-223-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009233
Biotype: transcript isomorph
Gene id: XLOC_004269
Gene Name: XLOC_004269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1954-1960
0.023
0
7mer
200-222
0.006
0
NRG1-IT1
hsa-miR-223-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_104158.1
Biotype: sense
Gene id: NR_104158.1 (gene)
Gene Name: NRG1-IT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-266
0.029
0
AC079779.4
hsa-miR-223-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450709
Biotype: retained_intron
Gene id: ENSG00000228643
Gene Name: AC079779.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-359
0.029
0
FLJ41278
hsa-miR-223-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_033988.1
Biotype: lincRNA
Gene id: NR_033988.1 (gene)
Gene Name: FLJ41278
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2783-2789
0.025
0
6mer
30-46
0.004
1
XLOC_010720
hsa-miR-223-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022114
Biotype: transcript isomorph
Gene id: XLOC_010720
Gene Name: XLOC_010720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
566-583
0.029
0
RP11-659E9.4
hsa-miR-223-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521556
Biotype: antisense
Gene id: ENSG00000253121
Gene Name: RP11-659E9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-385
0.029
1
XLOC_010331
hsa-miR-223-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021535
Biotype: transcript isomorph
Gene id: XLOC_010331
Gene Name: XLOC_010331
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-113
0.026
2
6mer
364-373
0.003
0
LINC01347
hsa-miR-223-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427210
Biotype: lincRNA
Gene id: ENSG00000214837
Gene Name: LINC01347
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-34
0.029
0
RP11-135J2.3
hsa-miR-223-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420237
Biotype: lincRNA
Gene id: ENSG00000223842
Gene Name: RP11-135J2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-66
0.023
1
6mer
1082-1102
0.006
2
LINC00652
hsa-miR-223-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000455340
Biotype: lincRNA
Gene id: ENSG00000179935
Gene Name: LINC00652
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-64
0.029
3
AC097467.2
hsa-miR-223-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609716
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
719-724
0.024
2
6mer
12-35
0.005
1
XLOC_007808
hsa-miR-223-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016443
Biotype: transcript isomorph
Gene id: XLOC_007808
Gene Name: XLOC_007808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1556-1569
0.021
8
6mer
5809-5815
0.002
1
6mer
4526-4541
0.002
1
6mer
4830-4847
0.001
3
6mer
2711-2730
0.001
1
6mer
5376-5387
0.001
1
AC097467.2
hsa-miR-223-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608406
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
529-534
0.024
2
6mer
12-35
0.005
1
RP11-19D2.1
hsa-miR-223-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000428954
Biotype: lincRNA
Gene id: ENSG00000238102
Gene Name: RP11-19D2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-209
0.029
2
SERTAD4-AS1
hsa-miR-223-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000480052
Biotype: antisense
Gene id: ENSG00000203706
Gene Name: SERTAD4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-101
0.029
6
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