LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
LMLN-AS1
hsa-miR-223-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423460
Biotype: antisense
Gene id: ENSG00000232832
Gene Name: LMLN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-240
0.030
0
XLOC_003102
hsa-miR-223-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007152
Biotype: transcript isomorph
Gene id: XLOC_003102
Gene Name: XLOC_003102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1004-1017
0.030
1
XLOC_000630
hsa-miR-223-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002266
Biotype: transcript isomorph
Gene id: XLOC_000630
Gene Name: XLOC_000630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
296-308
0.030
1
AC012485.2
hsa-miR-223-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437372
Biotype: antisense
Gene id: ENSG00000232306
Gene Name: AC012485.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-41
0.019
2
7mer
532-557
0.010
0
RP11-706D8.3
hsa-miR-223-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000457125
Biotype: lincRNA
Gene id: ENSG00000226782
Gene Name: RP11-706D8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
247-256
0.020
3
6mer
100-118
0.005
2
6mer
181-196
0.005
1
OR2A1-AS1
hsa-miR-223-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000462305
Biotype: antisense
Gene id: ENSG00000244479
Gene Name: OR2A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
175-187
0.030
0
RP11-308N19.3
hsa-miR-223-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000446206
Biotype: lincRNA
Gene id: ENSG00000237062
Gene Name: RP11-308N19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
277-290
0.030
4
DAB1-AS1
hsa-miR-223-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000587466
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-307
0.029
1
AC097662.2
hsa-miR-223-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000396588
Biotype: antisense
Gene id: ENSG00000236432
Gene Name: AC097662.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1042-1066
0.026
2
6mer
621-637
0.004
2
AC002519.8
hsa-miR-223-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570073
Biotype: sense_intronic
Gene id: ENSG00000259810
Gene Name: AC002519.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
179-193
0.012
1
6mer
1843-1853
0.009
1
6mer
836-862
0.008
1
RP11-79H23.3
hsa-miR-223-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000565297
Biotype: lincRNA
Gene id: ENSG00000261618
Gene Name: RP11-79H23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2951-2957
0.023
1
7mer
1469-1477
0.006
1
KB-1183D5.13
hsa-miR-223-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000453273
Biotype: lincRNA
Gene id: ENSG00000206142
Gene Name: KB-1183D5.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
364-385
0.029
0
DAB1-AS1
hsa-miR-223-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000588227
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-307
0.029
1
CTD-3010D24.3
hsa-miR-223-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584975
Biotype: lincRNA
Gene id: ENSG00000263893
Gene Name: CTD-3010D24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
245-256
0.015
1
6mer
23-39
0.006
1
7mer
354-378
0.005
Not Conserved
6mer
401-428
0.004
0
RP11-108M9.3
hsa-miR-223-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438002
Biotype: lincRNA
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2305-2320
0.027
1
6mer
1587-1606
0.002
0
XLOC_003204
hsa-miR-223-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006588
Biotype: transcript isomorph
Gene id: XLOC_003204
Gene Name: XLOC_003204
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1031-1055
0.024
1
6mer
2489-2514
0.003
1
6mer
1995-2019
0.002
0
RP11-1026M7.3
hsa-miR-223-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515739
Biotype: lincRNA
Gene id: ENSG00000248943
Gene Name: RP11-1026M7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
529-542
0.029
0
RASGRF2-AS1
hsa-miR-223-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505107
Biotype: antisense
Gene id: ENSG00000251450
Gene Name: RASGRF2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-124
0.029
0
LINC01330
hsa-miR-223-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469060
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-163
0.026
1
6mer
320-336
0.003
0
LA16c-380H5.5
hsa-miR-223-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000607794
Biotype: lincRNA
Gene id: ENSG00000272079
Gene Name: LA16c-380H5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1219-1231
0.029
1
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