LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
RP4-694B14.8
hsa-miR-223-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000611460
Biotype: antisense
Gene id: ENSG00000278383
Gene Name: RP4-694B14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-156
0.030
1
XLOC_012197
hsa-miR-223-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025120
Biotype: transcript isomorph
Gene id: XLOC_012197
Gene Name: XLOC_012197
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
899-910
0.025
2
6mer
1065-1073
0.006
3
XLOC_004743
hsa-miR-223-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009610
Biotype: transcript isomorph
Gene id: XLOC_004743
Gene Name: XLOC_004743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1572-1587
0.028
0
6mer
1378-1398
0.003
0
RP4-705O1.1
hsa-miR-223-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000412672
Biotype: lincRNA
Gene id: ENSG00000230324
Gene Name: RP4-705O1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1015-1035
0.025
1
6mer
581-585
0.005
3
RP4-705O1.1
hsa-miR-223-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_027124.1
Biotype: lincRNA
Gene id: NR_027124.1 (gene)
Gene Name: RP4-705O1.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1011-1031
0.025
1
6mer
577-581
0.005
3
XLOC_004525
hsa-miR-223-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009258
Biotype: transcript isomorph
Gene id: XLOC_004525
Gene Name: XLOC_004525
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-390
0.021
Not Conserved
7mer
974-988
0.010
Not Conserved
RP11-1084E5.1
hsa-miR-223-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524134
Biotype: antisense
Gene id: ENSG00000253796
Gene Name: RP11-1084E5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
459-479
0.030
5
LINC00645
hsa-miR-223-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557359
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2979-2996
0.030
1
CTC-360P9.4
hsa-miR-223-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593082
Biotype: lincRNA
Gene id: ENSG00000267489
Gene Name: CTC-360P9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-252
0.030
1
CTD-3179P9.2
hsa-miR-223-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503877
Biotype: lincRNA
Gene id: ENSG00000250427
Gene Name: CTD-3179P9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
374-389
0.021
Not Conserved
7mer
973-987
0.010
Not Conserved
CTC-273B12.5
hsa-miR-223-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600529
Biotype: antisense
Gene id: ENSG00000268530
Gene Name: CTC-273B12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
372-384
0.030
1
LOC100505811
hsa-miR-223-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104609.1
Biotype: lincRNA
Gene id: NR_104609.1 (gene)
Gene Name: LOC100505811
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-390
0.021
Not Conserved
7mer
974-988
0.010
Not Conserved
RP11-6N13.1
hsa-miR-223-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000524159
Biotype: lincRNA
Gene id: ENSG00000251574
Gene Name: RP11-6N13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-198
0.030
0
RP11-693J15.5
hsa-miR-223-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7548-7568
0.025
2
6mer
449-467
0.003
2
6mer
8557-8584
0.001
Not Conserved
LINC00645
hsa-miR-223-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557399
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3007-3024
0.030
1
XLOC_004924
hsa-miR-223-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6356-6382
0.010
0
8mer
362-377
0.010
1
6mer
10384-10402
0.003
3
6mer
869-885
0.003
3
6mer
515-532
0.002
0
6mer
3303-3322
0.001
1
BACE2-IT1
hsa-miR-223-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000433378
Biotype: antisense
Gene id: ENSG00000224388
Gene Name: BACE2-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-110
0.030
1
RP11-568N6.1
hsa-miR-223-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000561559
Biotype: lincRNA
Gene id: ENSG00000260101
Gene Name: RP11-568N6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1574-1597
0.030
1
RP1-167G20.1
hsa-miR-223-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513157
Biotype: lincRNA
Gene id: ENSG00000248150
Gene Name: RP1-167G20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1383-1398
0.028
0
6mer
1189-1209
0.002
0
CTC-273B12.5
hsa-miR-223-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593476
Biotype: antisense
Gene id: ENSG00000268530
Gene Name: CTC-273B12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
354-366
0.030
1
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