LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
RP11-164J13.1
hsa-miR-223-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000466369
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-591
0.026
6
6mer
410-419
0.003
2
6mer
1760-1781
0.002
2
RP11-826N14.1
hsa-miR-223-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509643
Biotype: antisense
Gene id: ENSG00000250992
Gene Name: RP11-826N14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-156
0.031
0
HOXA11-AS
hsa-miR-223-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000520395
Biotype: antisense
Gene id: ENSG00000240990
Gene Name: HOXA11-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1032-1044
0.026
10
6mer
687-709
0.005
5
RP11-764K9.1
hsa-miR-223-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2539-2547
0.019
0
6mer
2385-2402
0.012
0
RP11-164J13.1
hsa-miR-223-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000495723
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-591
0.026
6
6mer
410-419
0.003
2
6mer
1482-1503
0.002
2
AC073130.1
hsa-miR-223-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000457033
Biotype: lincRNA
Gene id: ENSG00000237870
Gene Name: AC073130.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
185-200
0.020
1
7mer
1150-1175
0.010
1
RP5-1028K7.2
hsa-miR-223-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578280
Biotype: lincRNA
Gene id: ENSG00000266088
Gene Name: RP5-1028K7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
608-619
0.025
2
6mer
774-782
0.006
3
AC079466.1
hsa-miR-223-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
698-723
0.011
1
7mer
1981-1997
0.011
1
6mer
2917-2941
0.005
1
6mer
1584-1607
0.003
0
RP11-164J13.1
hsa-miR-223-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549793
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-591
0.026
6
6mer
410-419
0.003
2
6mer
1482-1503
0.002
2
CTD-2215E18.1
hsa-miR-223-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504578
Biotype: lincRNA
Gene id: ENSG00000251513
Gene Name: CTD-2215E18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1529-1550
0.027
1
6mer
380-392
0.003
0
TPTEP1
hsa-miR-223-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426585
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-347
0.014
0
6mer
201-212
0.008
1
7mer
2836-2848
0.004
0
6mer
4838-4846
0.004
1
RP11-115D19.2
hsa-miR-223-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000620420
Biotype: antisense
Gene id: ENSG00000276542
Gene Name: RP11-115D19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
422-447
0.016
0
8mer
226-240
0.015
1
RP11-337C18.8
hsa-miR-223-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440377
Biotype: antisense
Gene id: ENSG00000237188
Gene Name: RP11-337C18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-194
0.019
1
8mer
830-841
0.012
0
XLOC_001935
hsa-miR-223-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005057
Biotype: transcript isomorph
Gene id: XLOC_001935
Gene Name: XLOC_001935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
857-867
0.030
0
RP1-138B7.5
hsa-miR-223-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000442482
Biotype: antisense
Gene id: ENSG00000226143
Gene Name: RP1-138B7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
477-495
0.030
5
XLOC_004433
hsa-miR-223-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010717
Biotype: transcript isomorph
Gene id: XLOC_004433
Gene Name: XLOC_004433
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-163
0.030
2
RP11-229P13.25
hsa-miR-223-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000569497
Biotype: sense_overlapping
Gene id: ENSG00000260190
Gene Name: RP11-229P13.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
645-668
0.030
0
RP11-403I13.8
hsa-miR-223-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000578899
Biotype: lincRNA
Gene id: ENSG00000272419
Gene Name: RP11-403I13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
555-570
0.015
0
6mer
165-182
0.002
0
RP4-545C24.1
hsa-miR-223-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000474656
Biotype: antisense
Gene id: ENSG00000244198
Gene Name: RP4-545C24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
587-599
0.030
0
LOC550113
hsa-miR-223-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_046116.1
Biotype: antisense
Gene id: NR_046116.1 (gene)
Gene Name: LOC550113
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2781-2786
0.014
0
7mer
2405-2421
0.008
1
7mer
2388-2401
0.005
Not Conserved
6mer
2445-2456
0.003
3
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