LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
LINC01279
hsa-miR-223-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610103
Biotype: lincRNA
Gene id: ENSG00000272761
Gene Name: LINC01279
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1120-1142
0.029
1
6mer
776-799
0.003
1
RP5-875O13.1
hsa-miR-223-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415386
Biotype: lincRNA
Gene id: ENSG00000233421
Gene Name: RP5-875O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
168-183
0.030
1
6mer
1282-1301
0.002
Not Conserved
RP11-794P6.1
hsa-miR-223-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528614
Biotype: sense_intronic
Gene id: ENSG00000255428
Gene Name: RP11-794P6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2296-2310
0.024
4
7mer
1669-1678
0.007
1
XLOC_004299
hsa-miR-223-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009877
Biotype: transcript isomorph
Gene id: XLOC_004299
Gene Name: XLOC_004299
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-52
0.031
1
Z83001.1
hsa-miR-223-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000429821
Biotype: antisense
Gene id: ENSG00000228061
Gene Name: Z83001.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-44
0.031
7
DLX6-AS1
hsa-miR-223-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10824-10850
0.016
0
8mer
5696-5712
0.007
1
8mer
4848-4861
0.005
1
6mer
11534-11551
0.002
1
6mer
2446-2465
0.001
0
6mer
4844-4861
0.000
1
LL22NC03-86G7.1
hsa-miR-223-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8602-8615
0.005
1
7mer
31889-31902
0.004
1
6mer
36930-36957
0.003
2
6mer
644-667
0.002
1
6mer
17346-17361
0.002
7
6mer
28913-28927
0.002
8
6mer
35120-35124
0.002
2
6mer
3825-3833
0.001
1
6mer
4506-4531
0.001
1
6mer
19664-19677
0.001
Not Conserved
6mer
31432-31455
0.001
0
6mer
18493-18514
0.001
1
6mer
27084-27103
0.001
1
6mer
15559-15577
0.001
1
6mer
2403-2412
0.001
0
6mer
17197-17216
0.001
1
6mer
32011-32026
0.001
0
6mer
25125-25152
0.001
1
6mer
19743-19760
0.000
0
6mer
4562-4581
0.000
0
RP11-490B18.5
hsa-miR-223-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621911
Biotype: lincRNA
Gene id: ENSG00000276408
Gene Name: RP11-490B18.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-169
0.028
1
6mer
449-454
0.003
1
LINC00277
hsa-miR-223-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000415504
Biotype: lincRNA
Gene id: ENSG00000212766
Gene Name: LINC00277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
932-957
0.014
1
6mer
2073-2077
0.007
3
6mer
162-172
0.004
Not Conserved
6mer
2074-2097
0.004
0
6mer
1556-1569
0.002
1
RP11-108M9.3
hsa-miR-223-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453554
Biotype: lincRNA
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1366-1381
0.028
1
6mer
248-267
0.003
0
KIZ-AS1
hsa-miR-223-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000616177
Biotype: antisense
Gene id: ENSG00000232712
Gene Name: KIZ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5064-5080
0.007
8
6mer
245-261
0.007
2
6mer
5113-5128
0.005
2
6mer
4704-4730
0.003
2
6mer
171-179
0.003
0
6mer
981-1006
0.002
0
7mer
1948-1965
0.002
0
6mer
1761-1783
0.001
1
LINC00900
hsa-miR-223-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_034148.1
Biotype: lincRNA
Gene id: NR_034148.1 (gene)
Gene Name: LINC00900
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-76
0.018
2
8mer
1445-1462
0.009
0
6mer
2174-2192
0.004
0
RP11-164J13.1
hsa-miR-223-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000483208
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-591
0.026
6
6mer
410-419
0.003
2
6mer
1482-1503
0.002
2
XLOC_007176
hsa-miR-223-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015126
Biotype: transcript isomorph
Gene id: XLOC_007176
Gene Name: XLOC_007176
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
157-170
0.022
1
6mer
930-953
0.009
5
RP11-281O15.8
hsa-miR-223-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606195
Biotype: lincRNA
Gene id: ENSG00000272431
Gene Name: RP11-281O15.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-72
0.031
0
XLOC_002859
hsa-miR-223-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005435
Biotype: transcript isomorph
Gene id: XLOC_002859
Gene Name: XLOC_002859
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1926-1936
0.028
4
6mer
2770-2775
0.003
1
LINC01198
hsa-miR-223-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000594428
Biotype: lincRNA
Gene id: ENSG00000231817
Gene Name: LINC01198
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3-11
0.031
0
XLOC_010486
hsa-miR-223-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021888
Biotype: transcript isomorph
Gene id: XLOC_010486
Gene Name: XLOC_010486
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-66
0.031
2
XLOC_002759
hsa-miR-223-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006930
Biotype: transcript isomorph
Gene id: XLOC_002759
Gene Name: XLOC_002759
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-322
0.025
4
7mer
1845-1862
0.005
1
AC064834.1
hsa-miR-223-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413290
Biotype: lincRNA
Gene id: ENSG00000224099
Gene Name: AC064834.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-151
0.026
3
6mer
507-516
0.005
1
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