LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-223-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
LOC100287834
hsa-miR-223-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_028349.1
Biotype: lincRNA
Gene id: NR_028349.1 (gene)
Gene Name: LOC100287834
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-143
0.033
0
DSCAM-IT1
hsa-miR-223-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000440363
Biotype: sense_intronic
Gene id: ENSG00000233756
Gene Name: DSCAM-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-295
0.021
1
7mer
666-671
0.012
0
RP11-356J5.13
hsa-miR-223-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000595053
Biotype: antisense
Gene id: ENSG00000268472
Gene Name: RP11-356J5.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
352-375
0.033
0
LINC01476
hsa-miR-223-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577478
Biotype: lincRNA
Gene id: ENSG00000265313
Gene Name: LINC01476
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-151
0.019
1
7mer
295-300
0.010
0
6mer
214-234
0.005
2
RP11-1094M14.5
hsa-miR-223-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592908
Biotype: sense_intronic
Gene id: ENSG00000267074
Gene Name: RP11-1094M14.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
103-115
0.017
1
7mer
98-115
0.016
0
XLOC_010415
hsa-miR-223-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021814
Biotype: transcript isomorph
Gene id: XLOC_010415
Gene Name: XLOC_010415
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-59
0.025
4
6mer
5167-5186
0.005
0
6mer
717-743
0.003
0
RP11-271F18.4
hsa-miR-223-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000602311
Biotype: lincRNA
Gene id: ENSG00000270111
Gene Name: RP11-271F18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
446-458
0.023
4
6mer
368-387
0.010
7
RP11-89N17.3
hsa-miR-223-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440074
Biotype: lincRNA
Gene id: ENSG00000233219
Gene Name: RP11-89N17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
202-222
0.027
1
6mer
219-223
0.006
1
RP11-154D6.1
hsa-miR-223-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000587253
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-139
0.029
1
6mer
212-231
0.004
1
LINC01362
hsa-miR-223-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452901
Biotype: lincRNA
Gene id: ENSG00000230817
Gene Name: LINC01362
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1123-1129
0.024
2
8mer
707-715
0.009
0
RNF219-AS1
hsa-miR-223-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000605996
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
758-781
0.028
1
6mer
171-191
0.004
0
AC097467.2
hsa-miR-223-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000594666
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-49
0.025
2
6mer
380-393
0.007
5
RP11-376M2.2
hsa-miR-223-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587526
Biotype: sense_intronic
Gene id: ENSG00000267230
Gene Name: RP11-376M2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
675-691
0.015
0
8mer
1058-1070
0.011
0
6mer
1271-1294
0.005
1
6mer
648-666
0.002
0
AC097467.2
hsa-miR-223-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000615177
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-49
0.025
2
6mer
380-393
0.007
5
XLOC_010622
hsa-miR-223-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021656
Biotype: transcript isomorph
Gene id: XLOC_010622
Gene Name: XLOC_010622
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5111-5127
0.013
2
6mer
5866-5882
0.005
3
7mer
1867-1884
0.005
0
7mer
1699-1722
0.005
1
7mer
3662-3683
0.003
0
6mer
1493-1506
0.002
1
RP11-12M5.3
hsa-miR-223-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415218
Biotype: antisense
Gene id: ENSG00000229407
Gene Name: RP11-12M5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-50
0.028
3
6mer
47-57
0.005
1
XLOC_003199
hsa-miR-223-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006575
Biotype: transcript isomorph
Gene id: XLOC_003199
Gene Name: XLOC_003199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1444-1462
0.032
5
XLOC_007710
hsa-miR-223-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015825
Biotype: transcript isomorph
Gene id: XLOC_007710
Gene Name: XLOC_007710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2539-2547
0.020
0
6mer
2385-2402
0.013
0
LINC00484
hsa-miR-223-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000608240
Biotype: lincRNA
Gene id: ENSG00000235641
Gene Name: LINC00484
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-133
0.032
1
RP11-2O17.2
hsa-miR-223-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_109910.1
Biotype: antisense
Gene id: NR_109910.1 (gene)
Gene Name: RP11-2O17.2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
583-598
0.032
3
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept