LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
CTA-544A11.1
hsa-miR-223-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11321-11347
0.020
1
6mer
2492-2518
0.003
6
6mer
1925-1930
0.003
5
6mer
10622-10632
0.003
3
6mer
1665-1685
0.002
3
6mer
5174-5196
0.002
2
DAB1-AS1
hsa-miR-223-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608833
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
609-616
0.034
1
XLOC_010106
hsa-miR-223-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020820
Biotype: transcript isomorph
Gene id: XLOC_010106
Gene Name: XLOC_010106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2671-2681
0.034
2
RP3-495K2.3
hsa-miR-223-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444586
Biotype: lincRNA
Gene id: ENSG00000225879
Gene Name: RP3-495K2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-472
0.034
1
RP11-375D13.4
hsa-miR-223-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530946
Biotype: lincRNA
Gene id: ENSG00000255279
Gene Name: RP11-375D13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-421
0.034
3
RP11-809C9.3
hsa-miR-223-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000622305
Biotype: lincRNA
Gene id: ENSG00000278295
Gene Name: RP11-809C9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-305
0.034
1
XLOC_012784
hsa-miR-223-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1789-1804
0.033
0
AC097467.2
hsa-miR-223-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000620130
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-49
0.025
2
6mer
380-393
0.008
5
XLOC_005417
hsa-miR-223-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011185
Biotype: transcript isomorph
Gene id: XLOC_005417
Gene Name: XLOC_005417
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1949-1967
0.032
11
6mer
1186-1193
0.002
0
RP5-1125N11.1
hsa-miR-223-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440358
Biotype: lincRNA
Gene id: ENSG00000229607
Gene Name: RP5-1125N11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-69
0.017
1
8mer
164-190
0.016
1
RP11-538D16.2
hsa-miR-223-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411509
Biotype: lincRNA
Gene id: ENSG00000224810
Gene Name: RP11-538D16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2250-2276
0.022
3
7mer
1565-1570
0.008
0
6mer
937-959
0.003
1
RP3-355L5.5
hsa-miR-223-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606817
Biotype: lincRNA
Gene id: ENSG00000272102
Gene Name: RP3-355L5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-370
0.017
1
9mer
471-482
0.016
0
LINC01198
hsa-miR-223-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000594153
Biotype: lincRNA
Gene id: ENSG00000231817
Gene Name: LINC01198
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3-11
0.033
0
RP11-546K22.1
hsa-miR-223-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521188
Biotype: lincRNA
Gene id: ENSG00000253844
Gene Name: RP11-546K22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
613-625
0.024
0
6mer
488-500
0.005
2
6mer
643-658
0.005
0
RP11-515E23.2
hsa-miR-223-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572159
Biotype: lincRNA
Gene id: ENSG00000262395
Gene Name: RP11-515E23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
33-53
0.033
1
RP11-495P10.1
hsa-miR-223-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426101
Biotype: lincRNA
Gene id: ENSG00000231551
Gene Name: RP11-495P10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-252
0.012
3
6mer
151-164
0.006
1
AC062029.1
hsa-miR-223-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606164
Biotype: antisense
Gene id: ENSG00000234028
Gene Name: AC062029.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3311-3325
0.017
1
7mer
3071-3093
0.011
1
6mer
21-44
0.005
1
CTA-796E4.5
hsa-miR-223-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
17920-17937
0.018
1
7mer
4385-4410
0.004
1
6mer
21630-21646
0.002
2
6mer
5179-5192
0.002
3
6mer
23072-23079
0.002
2
6mer
12673-12677
0.002
2
6mer
18213-18231
0.001
1
6mer
6068-6084
0.001
1
6mer
10925-10939
0.001
1
CTD-2074D8.1
hsa-miR-223-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507526
Biotype: lincRNA
Gene id: ENSG00000250694
Gene Name: CTD-2074D8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-126
0.024
1
6mer
378-387
0.009
1
XLOC_000269
hsa-miR-223-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000242
Biotype: transcript isomorph
Gene id: XLOC_000269
Gene Name: XLOC_000269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1289-1295
0.023
2
8mer
707-715
0.010
0
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