LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-223-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_007218
hsa-miR-223-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014536
Biotype: transcript isomorph
Gene id: XLOC_007218
Gene Name: XLOC_007218
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1729-1750
0.034
0
RP11-230G5.2
hsa-miR-223-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537250
Biotype: lincRNA
Gene id: ENSG00000250748
Gene Name: RP11-230G5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
438-446
0.034
2
RP11-44I10.3
hsa-miR-223-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563994
Biotype: antisense
Gene id: ENSG00000261267
Gene Name: RP11-44I10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-270
0.019
2
7mer
86-96
0.016
1
AL450226.2
hsa-miR-223-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000414776
Biotype: antisense
Gene id: ENSG00000225084
Gene Name: AL450226.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
389-398
0.030
1
6mer
571-590
0.004
4
DAB1-AS1
hsa-miR-223-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000592753
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
662-669
0.034
1
FAM211A-AS1
hsa-miR-223-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_045026.1
Biotype: lincRNA
Gene id: NR_045026.1 (gene)
Gene Name: FAM211A-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-189
0.034
8
DAB1-AS1
hsa-miR-223-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000585576
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
647-654
0.034
1
XLOC_005919
hsa-miR-223-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012359
Biotype: transcript isomorph
Gene id: XLOC_005919
Gene Name: XLOC_005919
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-101
0.016
1
7mer
661-672
0.012
2
6mer
61-80
0.006
3
CTB-191K22.6
hsa-miR-223-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597049
Biotype: antisense
Gene id: ENSG00000269392
Gene Name: CTB-191K22.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
38-45
0.034
1
DAB1-AS1
hsa-miR-223-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000585589
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
694-701
0.034
1
RP11-124D2.3
hsa-miR-223-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554010
Biotype: antisense
Gene id: ENSG00000259018
Gene Name: RP11-124D2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-35
0.025
2
6mer
262-276
0.009
4
AC114776.3
hsa-miR-223-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
657-668
0.034
1
RP11-494M8.4
hsa-miR-223-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527847
Biotype: sense_overlapping
Gene id: ENSG00000254951
Gene Name: RP11-494M8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1343-1351
0.034
2
SNHG14
hsa-miR-223-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557108
Biotype: retained_intron
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
568-587
0.031
1
6mer
987-1009
0.003
1
DAB1-AS1
hsa-miR-223-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420811
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
654-661
0.034
1
AC013727.1
hsa-miR-223-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455716
Biotype: lincRNA
Gene id: ENSG00000232597
Gene Name: AC013727.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
513-537
0.034
10
RP11-630D6.5
hsa-miR-223-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501239
Biotype: antisense
Gene id: ENSG00000245928
Gene Name: RP11-630D6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-165
0.018
1
7mer
1421-1431
0.016
2
AC007204.2
hsa-miR-223-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592245
Biotype: lincRNA
Gene id: ENSG00000267268
Gene Name: AC007204.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
305-328
0.027
0
6mer
564-591
0.007
0
RP11-472K22.2
hsa-miR-223-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512268
Biotype: lincRNA
Gene id: ENSG00000248338
Gene Name: RP11-472K22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
395-400
0.027
7
6mer
309-322
0.007
8
DAB1-AS1
hsa-miR-223-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610197
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
613-620
0.034
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept