LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
RP11-1C1.5
hsa-miR-223-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506021
Biotype: lincRNA
Gene id: ENSG00000249160
Gene Name: RP11-1C1.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
229-255
0.024
1
7mer
508-530
0.013
1
AC073254.1
hsa-miR-223-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597193
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-44
0.036
0
TCL6
hsa-miR-223-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000486671
Biotype: retained_intron
Gene id: ENSG00000187621
Gene Name: TCL6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2433-2443
0.034
6
6mer
744-755
0.002
1
LINC00639
hsa-miR-223-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_039982.1
Biotype: lincRNA
Gene id: NR_039982.1 (gene)
Gene Name: LINC00639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4160-4167
0.022
1
7mer
1572-1597
0.005
1
7mer
357-368
0.005
0
6mer
1062-1070
0.002
1
6mer
2209-2221
0.002
0
6mer
2040-2063
0.001
Not Conserved
AC012322.1
hsa-miR-223-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561657
Biotype: lincRNA
Gene id: ENSG00000261028
Gene Name: AC012322.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-59
0.026
2
6mer
73-91
0.007
3
6mer
249-276
0.003
Not Conserved
LINC01410
hsa-miR-223-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427509
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
336-344
0.019
0
6mer
481-498
0.017
0
C5orf27
hsa-miR-223-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000436592
Biotype: lincRNA
Gene id: ENSG00000236882
Gene Name: C5orf27
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
558-575
0.036
0
XLOC_008539
hsa-miR-223-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018257
Biotype: transcript isomorph
Gene id: XLOC_008539
Gene Name: XLOC_008539
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-144
0.033
1
6mer
394-414
0.003
2
RP11-532N4.2
hsa-miR-223-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000587049
Biotype: antisense
Gene id: ENSG00000235535
Gene Name: RP11-532N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-455
0.017
1
6mer
75-102
0.010
7
6mer
354-365
0.008
5
LINC00862
hsa-miR-223-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000367356
Biotype: lincRNA
Gene id: ENSG00000203721
Gene Name: LINC00862
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
509-524
0.036
1
RP11-879F14.2
hsa-miR-223-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000587754
Biotype: lincRNA
Gene id: ENSG00000267279
Gene Name: RP11-879F14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-260
0.033
0
6mer
201-220
0.003
1
CSMD2-AS1
hsa-miR-223-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425631
Biotype: antisense
Gene id: ENSG00000231163
Gene Name: CSMD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
232-241
0.036
2
ARRDC1-AS1
hsa-miR-223-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000496793
Biotype: antisense
Gene id: ENSG00000203993
Gene Name: ARRDC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-319
0.028
0
7mer
499-519
0.008
0
XLOC_011074
hsa-miR-223-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022796
Biotype: transcript isomorph
Gene id: XLOC_011074
Gene Name: XLOC_011074
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-75
0.031
1
6mer
433-450
0.005
4
RP5-1028K7.2
hsa-miR-223-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577557
Biotype: lincRNA
Gene id: ENSG00000266088
Gene Name: RP5-1028K7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-348
0.029
2
6mer
503-511
0.007
3
LINC00639
hsa-miR-223-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554732
Biotype: lincRNA
Gene id: ENSG00000259070
Gene Name: LINC00639
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4156-4163
0.021
1
7mer
1568-1593
0.005
1
7mer
353-364
0.005
0
6mer
1058-1066
0.002
1
6mer
2205-2217
0.002
0
6mer
2036-2059
0.001
Not Conserved
XLOC_007181
hsa-miR-223-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015134
Biotype: transcript isomorph
Gene id: XLOC_007181
Gene Name: XLOC_007181
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
262-282
0.036
5
XLOC_009601
hsa-miR-223-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019178
Biotype: transcript isomorph
Gene id: XLOC_009601
Gene Name: XLOC_009601
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
407-429
0.036
1
XLOC_005793
hsa-miR-223-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012236
Biotype: transcript isomorph
Gene id: XLOC_005793
Gene Name: XLOC_005793
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-116
0.036
10
CTC-273B12.5
hsa-miR-223-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596497
Biotype: antisense
Gene id: ENSG00000268530
Gene Name: CTC-273B12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
357-369
0.035
1
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