LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
PKN2-AS1
hsa-miR-223-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000458097
Biotype: antisense
Gene id: ENSG00000237505
Gene Name: PKN2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
544-554
0.013
7
7mer
606-617
0.012
3
7mer
3318-3340
0.012
1
LINC00639
hsa-miR-223-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553932
Biotype: lincRNA
Gene id: ENSG00000259070
Gene Name: LINC00639
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4355-4362
0.022
1
7mer
1767-1792
0.005
1
7mer
552-563
0.004
0
6mer
465-480
0.002
3
6mer
2404-2416
0.001
0
6mer
1257-1265
0.001
1
6mer
2235-2258
0.001
Not Conserved
XLOC_005847
hsa-miR-223-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012290
Biotype: transcript isomorph
Gene id: XLOC_005847
Gene Name: XLOC_005847
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-440
0.034
1
6mer
557-571
0.003
1
XLOC_011387
hsa-miR-223-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023563
Biotype: transcript isomorph
Gene id: XLOC_011387
Gene Name: XLOC_011387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
348-356
0.037
1
LINC01476
hsa-miR-223-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584262
Biotype: lincRNA
Gene id: ENSG00000265313
Gene Name: LINC01476
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-112
0.025
1
7mer
256-261
0.008
0
6mer
175-195
0.005
2
RP11-449P15.2
hsa-miR-223-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609998
Biotype: antisense
Gene id: ENSG00000273151
Gene Name: RP11-449P15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
659-675
0.032
1
6mer
122-139
0.003
1
6mer
4569-4590
0.001
0
6mer
4522-4532
0.001
1
6mer
3801-3824
0.001
0
XLOC_012598
hsa-miR-223-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026224
Biotype: transcript isomorph
Gene id: XLOC_012598
Gene Name: XLOC_012598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
72-92
0.020
Not Conserved
6mer
2041-2051
0.017
0
AC006116.19
hsa-miR-223-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591936
Biotype: sense_intronic
Gene id: ENSG00000267298
Gene Name: AC006116.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-441
0.037
1
AC106801.1
hsa-miR-223-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518054
Biotype: antisense
Gene id: ENSG00000253519
Gene Name: AC106801.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
284-303
0.020
0
8mer
713-730
0.018
1
ZRANB2-AS2
hsa-miR-223-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000587306
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
619-634
0.014
5
7mer
17-39
0.013
1
7mer
388-401
0.010
1
RP11-397G17.1
hsa-miR-223-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415106
Biotype: lincRNA
Gene id: ENSG00000226733
Gene Name: RP11-397G17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-45
0.037
11
XLOC_012891
hsa-miR-223-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026572
Biotype: transcript isomorph
Gene id: XLOC_012891
Gene Name: XLOC_012891
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
583-594
0.037
0
MACROD2-AS1
hsa-miR-223-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000455291
Biotype: antisense
Gene id: ENSG00000235914
Gene Name: MACROD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
556-577
0.037
1
RP11-1022B3.1
hsa-miR-223-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551729
Biotype: lincRNA
Gene id: ENSG00000258117
Gene Name: RP11-1022B3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-150
0.037
2
PRKG1-AS1
hsa-miR-223-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038277.1
Biotype: antisense
Gene id: NR_038277.1 (gene)
Gene Name: PRKG1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
419-444
0.037
9
XLOC_007515
hsa-miR-223-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015734
Biotype: transcript isomorph
Gene id: XLOC_007515
Gene Name: XLOC_007515
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
43-62
0.037
1
RP11-376P6.3
hsa-miR-223-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000608943
Biotype: sense_intronic
Gene id: ENSG00000273368
Gene Name: RP11-376P6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
185-207
0.037
1
RP11-234B24.2
hsa-miR-223-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000527518
Biotype: lincRNA
Gene id: ENSG00000255474
Gene Name: RP11-234B24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
832-839
0.037
1
XLOC_004915
hsa-miR-223-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010981
Biotype: transcript isomorph
Gene id: XLOC_004915
Gene Name: XLOC_004915
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-92
0.037
0
RP11-588K22.2
hsa-miR-223-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000569449
Biotype: sense_overlapping
Gene id: ENSG00000260244
Gene Name: RP11-588K22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2121-2133
0.036
1
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