LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
CTD-2201I18.1
hsa-miR-223-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514042
Biotype: antisense
Gene id: ENSG00000249825
Gene Name: CTD-2201I18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1120-1141
0.025
1
8mer
851-857
0.013
0
XLOC_010764
hsa-miR-223-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022427
Biotype: transcript isomorph
Gene id: XLOC_010764
Gene Name: XLOC_010764
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-40
0.031
7
6mer
130-149
0.007
4
RP11-230G5.2
hsa-miR-223-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535315
Biotype: lincRNA
Gene id: ENSG00000250748
Gene Name: RP11-230G5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
360-368
0.034
2
6mer
580-590
0.004
2
XLOC_012710
hsa-miR-223-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026358
Biotype: transcript isomorph
Gene id: XLOC_012710
Gene Name: XLOC_012710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1157-1164
0.038
0
CTD-3080P12.3
hsa-miR-223-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514376
Biotype: antisense
Gene id: ENSG00000249201
Gene Name: CTD-3080P12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1414-1429
0.019
0
7mer
976-1001
0.011
0
6mer
1362-1388
0.005
1
6mer
1128-1140
0.003
1
XLOC_000255
hsa-miR-223-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000984
Biotype: transcript isomorph
Gene id: XLOC_000255
Gene Name: XLOC_000255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
264-287
0.021
1
7mer
294-311
0.017
0
LINC00276
hsa-miR-223-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418420
Biotype: lincRNA
Gene id: ENSG00000230448
Gene Name: LINC00276
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1221-1235
0.036
1
6mer
1011-1025
0.002
1
DLX6-AS1
hsa-miR-223-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000431497
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-464
0.036
0
6mer
1148-1165
0.002
1
XLOC_006685
hsa-miR-223-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014575
Biotype: transcript isomorph
Gene id: XLOC_006685
Gene Name: XLOC_006685
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
864-876
0.028
0
7mer
294-319
0.010
1
LINC00901
hsa-miR-223-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000487512
Biotype: antisense
Gene id: ENSG00000242385
Gene Name: LINC00901
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1430-1437
0.025
4
7mer
340-345
0.009
0
6mer
676-701
0.002
2
6mer
676-683
0.002
0
MIR4435-1HG
hsa-miR-223-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605570
Biotype: retained_intron
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
276-286
0.038
1
LINC01360
hsa-miR-223-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415686
Biotype: lincRNA
Gene id: ENSG00000233973
Gene Name: LINC01360
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
179-198
0.038
0
RP11-192H23.7
hsa-miR-223-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583787
Biotype: antisense
Gene id: ENSG00000264044
Gene Name: RP11-192H23.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-128
0.038
7
DLX6-AS1
hsa-miR-223-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605417
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-464
0.036
0
6mer
1148-1165
0.002
1
CTB-92J24.3
hsa-miR-223-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598914
Biotype: antisense
Gene id: ENSG00000269289
Gene Name: CTB-92J24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
803-824
0.038
0
RP11-131L12.4
hsa-miR-223-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000610630
Biotype: lincRNA
Gene id: ENSG00000275409
Gene Name: RP11-131L12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-343
0.032
1
6mer
50-61
0.005
1
AC139100.3
hsa-miR-223-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000615495
Biotype: antisense
Gene id: ENSG00000267251
Gene Name: AC139100.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1111-1137
0.038
0
LINC00470
hsa-miR-223-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582570
Biotype: lincRNA
Gene id: ENSG00000132204
Gene Name: LINC00470
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-564
0.038
1
RP5-905H7.11
hsa-miR-223-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000456890
Biotype: retained_intron
Gene id: ENSG00000230000
Gene Name: RP5-905H7.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2772-2792
0.028
Not Conserved
7mer
1398-1407
0.005
0
6mer
2188-2192
0.003
0
6mer
1759-1777
0.001
0
DLX6-AS1
hsa-miR-223-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437331
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-464
0.036
0
6mer
1148-1165
0.002
1
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