LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
LINC01074
hsa-miR-223-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000422527
Biotype: lincRNA
Gene id: ENSG00000227611
Gene Name: LINC01074
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-541
0.040
1
RP11-715G15.1
hsa-miR-223-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419168
Biotype: lincRNA
Gene id: ENSG00000237468
Gene Name: RP11-715G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
592-613
0.031
1
6mer
1948-1967
0.005
2
6mer
845-859
0.003
1
PEG3-AS1
hsa-miR-223-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_023847.2
Biotype: antisense
Gene id: NR_023847.2 (gene)
Gene Name: PEG3-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-62
0.015
1
7mer
1093-1111
0.014
2
7mer
972-997
0.011
0
XLOC_001635
hsa-miR-223-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003823
Biotype: transcript isomorph
Gene id: XLOC_001635
Gene Name: XLOC_001635
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2517-2539
0.040
1
XLOC_009230
hsa-miR-223-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019407
Biotype: transcript isomorph
Gene id: XLOC_009230
Gene Name: XLOC_009230
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
293-305
0.039
1
CTD-3080P12.3
hsa-miR-223-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505972
Biotype: antisense
Gene id: ENSG00000249201
Gene Name: CTD-3080P12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
413-428
0.022
0
6mer
127-139
0.010
1
6mer
361-387
0.008
1
LINC00520
hsa-miR-223-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554186
Biotype: lincRNA
Gene id: ENSG00000258791
Gene Name: LINC00520
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Kidney Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
558-579
0.024
0
7mer
113-128
0.015
Not Conserved
RP11-230G5.2
hsa-miR-223-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539653
Biotype: lincRNA
Gene id: ENSG00000250748
Gene Name: RP11-230G5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
152-160
0.039
2
RP11-677O4.2
hsa-miR-223-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000561598
Biotype: lincRNA
Gene id: ENSG00000260759
Gene Name: RP11-677O4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-69
0.035
0
7mer
2180-2193
0.003
1
6mer
2140-2151
0.001
1
RP5-905H7.11
hsa-miR-223-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000615248
Biotype: lincRNA
Gene id: ENSG00000230000
Gene Name: RP5-905H7.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2147-2167
0.029
Not Conserved
7mer
1357-1366
0.008
0
6mer
1718-1736
0.002
0
RP11-310P5.1
hsa-miR-223-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506629
Biotype: antisense
Gene id: ENSG00000249650
Gene Name: RP11-310P5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
24-35
0.039
1
ERVH48-1
hsa-miR-223-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
41-57
0.018
0
8mer
2015-2034
0.012
Not Conserved
6mer
763-783
0.009
0
XLOC_003749
hsa-miR-223-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008301
Biotype: transcript isomorph
Gene id: XLOC_003749
Gene Name: XLOC_003749
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
438-460
0.021
0
7mer
77-94
0.018
1
AC097467.2
hsa-miR-223-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000596165
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-36
0.024
2
8mer
563-580
0.009
Not Conserved
6mer
367-380
0.007
5
RP11-11N9.4
hsa-miR-223-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500843
Biotype: lincRNA
Gene id: ENSG00000247134
Gene Name: RP11-11N9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
241-262
0.039
1
LINC01111
hsa-miR-223-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518732
Biotype: lincRNA
Gene id: ENSG00000254300
Gene Name: LINC01111
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-120
0.029
3
6mer
590-600
0.005
1
6mer
244-262
0.005
3
RP11-230G5.2
hsa-miR-223-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540652
Biotype: lincRNA
Gene id: ENSG00000250748
Gene Name: RP11-230G5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
164-172
0.039
2
RP11-809F4.3
hsa-miR-223-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-140
0.029
0
6mer
911-922
0.010
1
RP11-11N9.4
hsa-miR-223-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520819
Biotype: lincRNA
Gene id: ENSG00000247134
Gene Name: RP11-11N9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
276-290
0.039
1
LINC00242
hsa-miR-223-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000437615
Biotype: lincRNA
Gene id: ENSG00000229214
Gene Name: LINC00242
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2264-2279
0.030
1
6mer
2383-2395
0.004
1
6mer
64-73
0.004
0
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