LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
CTD-2143L24.1
hsa-miR-223-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512976
Biotype: lincRNA
Gene id: ENSG00000249781
Gene Name: CTD-2143L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-213
0.034
9
6mer
209-230
0.006
2
AC142293.3
hsa-miR-223-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510419
Biotype: antisense
Gene id: ENSG00000249942
Gene Name: AC142293.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
190-208
0.041
0
MACROD2-AS1
hsa-miR-223-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110318.1
Biotype: antisense
Gene id: NR_110318.1 (gene)
Gene Name: MACROD2-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-368
0.041
1
XLOC_002220
hsa-miR-223-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004346
Biotype: transcript isomorph
Gene id: XLOC_002220
Gene Name: XLOC_002220
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
12-28
0.010
1
6mer
218-233
0.010
1
6mer
115-131
0.009
1
DIO2-AS1
hsa-miR-223-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553979
Biotype: antisense
Gene id: ENSG00000258766
Gene Name: DIO2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-181
0.037
0
6mer
739-755
0.003
3
DIO2-AS1
hsa-miR-223-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_038355.1
Biotype: antisense
Gene id: NR_038355.1 (gene)
Gene Name: DIO2-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-181
0.037
0
6mer
739-755
0.003
3
DHRSX-IT1
hsa-miR-223-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000437244
Biotype: sense_intronic
Gene id: ENSG00000223571
Gene Name: DHRSX-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
582-588
0.040
0
LINC01330
hsa-miR-223-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496891
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-239
0.036
1
6mer
396-412
0.005
0
CSMD2-AS1
hsa-miR-223-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434181
Biotype: antisense
Gene id: ENSG00000231163
Gene Name: CSMD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
282-307
0.040
2
ST8SIA6-AS1
hsa-miR-223-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451225
Biotype: antisense
Gene id: ENSG00000204832
Gene Name: ST8SIA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-90
0.040
2
RP11-386B13.3
hsa-miR-223-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509017
Biotype: lincRNA
Gene id: ENSG00000250754
Gene Name: RP11-386B13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1014-1030
0.027
15
7mer
1673-1683
0.014
0
CTD-2033D15.2
hsa-miR-223-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000478845
Biotype: sense_intronic
Gene id: ENSG00000276107
Gene Name: CTD-2033D15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-40
0.035
2
6mer
113-131
0.005
5
UGDH-AS1
hsa-miR-223-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504032
Biotype: antisense
Gene id: ENSG00000249348
Gene Name: UGDH-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-572
0.036
0
6mer
2729-2739
0.004
Not Conserved
RP11-672L10.1
hsa-miR-223-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564872
Biotype: lincRNA
Gene id: ENSG00000259837
Gene Name: RP11-672L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
729-748
0.040
6
AC007091.1
hsa-miR-223-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412563
Biotype: lincRNA
Gene id: ENSG00000223838
Gene Name: AC007091.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
505-528
0.027
0
7mer
279-284
0.013
Not Conserved
XLOC_003932
hsa-miR-223-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00009040
Biotype: transcript isomorph
Gene id: XLOC_003932
Gene Name: XLOC_003932
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
793-810
0.025
0
7mer
787-796
0.012
0
6mer
745-759
0.003
0
XLOC_009215
hsa-miR-223-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019389
Biotype: transcript isomorph
Gene id: XLOC_009215
Gene Name: XLOC_009215
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-154
0.040
0
XLOC_006850
hsa-miR-223-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014769
Biotype: transcript isomorph
Gene id: XLOC_006850
Gene Name: XLOC_006850
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-210
0.031
3
6mer
678-688
0.005
1
6mer
334-352
0.004
3
CTB-176F20.3
hsa-miR-223-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600671
Biotype: antisense
Gene id: ENSG00000267934
Gene Name: CTB-176F20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1494-1503
0.034
0
6mer
2326-2342
0.003
0
6mer
1744-1758
0.003
0
XLOC_010028
hsa-miR-223-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020729
Biotype: transcript isomorph
Gene id: XLOC_010028
Gene Name: XLOC_010028
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
53-67
0.040
0
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