LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-223-3p


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Gene
miRNA
Score
DIANA Links
ST8SIA6-AS1
hsa-miR-223-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000457649
Biotype: antisense
Gene id: ENSG00000204832
Gene Name: ST8SIA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-148
0.042
2
LINC00662
hsa-miR-223-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590677
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
382-405
0.039
0
6mer
100-125
0.004
Not Conserved
ENOX1-AS1
hsa-miR-223-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444442
Biotype: lincRNA
Gene id: ENSG00000233821
Gene Name: ENOX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-192
0.024
1
9mer
1312-1328
0.015
1
6mer
999-1025
0.003
2
XLOC_006709
hsa-miR-223-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015214
Biotype: transcript isomorph
Gene id: XLOC_006709
Gene Name: XLOC_006709
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-232
0.042
4
MIR4435-1HG
hsa-miR-223-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439362
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
515-525
0.033
1
6mer
1357-1382
0.005
1
6mer
71-94
0.004
0
RP11-933H2.4
hsa-miR-223-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000502521
Biotype: antisense
Gene id: ENSG00000250608
Gene Name: RP11-933H2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1273-1289
0.042
1
RP11-248J18.3
hsa-miR-223-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602615
Biotype: sense_intronic
Gene id: ENSG00000270062
Gene Name: RP11-248J18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
118-131
0.042
0
RP5-991G20.2
hsa-miR-223-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000624370
Biotype: antisense
Gene id: ENSG00000259209
Gene Name: RP5-991G20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-173
0.042
4
MIR4534
hsa-miR-223-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8711-8731
0.006
2
7mer
3960-3986
0.005
1
8mer
44904-44926
0.004
0
7mer
8876-8895
0.004
2
7mer
22280-22299
0.003
0
7mer
51925-51934
0.002
1
6mer
32134-32138
0.002
1
6mer
33716-33727
0.002
2
6mer
43444-43452
0.001
1
6mer
23217-23233
0.001
3
6mer
49920-49932
0.001
2
6mer
53133-53158
0.001
0
6mer
47128-47140
0.001
1
6mer
29464-29475
0.001
1
6mer
8533-8548
0.001
Not Conserved
6mer
43794-43808
0.001
1
6mer
51077-51099
0.001
0
6mer
4670-4694
0.001
Not Conserved
6mer
29520-29544
0.001
7
6mer
32702-32726
0.001
Not Conserved
6mer
51220-51230
0.000
0
XLOC_002377
hsa-miR-223-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004484
Biotype: transcript isomorph
Gene id: XLOC_002377
Gene Name: XLOC_002377
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
96-114
0.034
0
6mer
392-406
0.008
6
CTD-2143L24.1
hsa-miR-223-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511616
Biotype: lincRNA
Gene id: ENSG00000249781
Gene Name: CTD-2143L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-203
0.030
9
6mer
199-220
0.006
2
6mer
1115-1131
0.004
2
6mer
990-1007
0.002
1
ST8SIA6-AS1
hsa-miR-223-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000377597
Biotype: antisense
Gene id: ENSG00000204832
Gene Name: ST8SIA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-133
0.041
2
LOC285692
hsa-miR-223-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_027112.2
Biotype: sense
Gene id: NR_027112.2 (gene)
Gene Name: LOC285692
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-203
0.029
9
6mer
199-220
0.006
2
6mer
1115-1131
0.004
2
6mer
990-1007
0.002
1
XLOC_009140
hsa-miR-223-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019094
Biotype: transcript isomorph
Gene id: XLOC_009140
Gene Name: XLOC_009140
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
274-286
0.041
0
RP11-232C2.1
hsa-miR-223-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553628
Biotype: antisense
Gene id: ENSG00000258478
Gene Name: RP11-232C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
649-657
0.035
1
6mer
704-720
0.006
4
MIR490
hsa-miR-223-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608269
Biotype: antisense
Gene id: ENSG00000234352
Gene Name: MIR490
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
794-807
0.018
2
7mer
69-87
0.013
2
7mer
382-389
0.010
4
RP11-731J8.2
hsa-miR-223-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6810-6822
0.029
1
9mer
1961-1973
0.012
0
RP1-266L20.4
hsa-miR-223-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430250
Biotype: antisense
Gene id: ENSG00000227704
Gene Name: RP1-266L20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
296-306
0.041
1
XLOC_007089
hsa-miR-223-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
685-695
0.022
0
6mer
11280-11288
0.007
0
6mer
2309-2331
0.003
0
6mer
11698-11721
0.003
Not Conserved
6mer
9940-9967
0.002
0
6mer
3826-3849
0.002
0
6mer
10297-10311
0.001
0
6mer
10396-10404
0.001
Not Conserved
6mer
5668-5672
0.001
Not Conserved
MACROD2-AS1
hsa-miR-223-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000439451
Biotype: antisense
Gene id: ENSG00000235914
Gene Name: MACROD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-223-3p
Sequence: ugucaguuugucaaauacccca
MirBase ID: MIMAT0000280
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1094-1115
0.041
1
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