LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-221-3p


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Gene
miRNA
Score
DIANA Links
RAPGEF4-AS1
hsa-miR-221-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_026995.1
Biotype: antisense
Gene id: NR_026995.1 (gene)
Gene Name: RAPGEF4-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-76
0.025
1
CTD-2561F5.1
hsa-miR-221-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555328
Biotype: lincRNA
Gene id: ENSG00000258497
Gene Name: CTD-2561F5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
689-710
0.022
0
6mer
1758-1778
0.003
1
XLOC_006637
hsa-miR-221-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013993
Biotype: transcript isomorph
Gene id: XLOC_006637
Gene Name: XLOC_006637
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1046-1067
0.012
1
7mer
303-330
0.009
2
6mer
461-482
0.004
2
RP11-1260E13.4
hsa-miR-221-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574432
Biotype: processed_transcript
Gene id: ENSG00000262061
Gene Name: RP11-1260E13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
888-911
0.019
0
7mer
13-32
0.006
0
RAPGEF4-AS1
hsa-miR-221-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435328
Biotype: antisense
Gene id: ENSG00000228016
Gene Name: RAPGEF4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-79
0.025
1
LINC01482
hsa-miR-221-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589610
Biotype: lincRNA
Gene id: ENSG00000267659
Gene Name: LINC01482
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
392-416
0.025
1
CTA-212A2.3
hsa-miR-221-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-76
0.008
0
6mer
14447-14466
0.003
0
7mer
14016-14038
0.002
Not Conserved
6mer
2072-2094
0.002
0
6mer
12231-12253
0.002
0
6mer
11452-11466
0.001
0
6mer
5894-5913
0.001
0
6mer
12528-12543
0.001
1
6mer
4142-4159
0.001
0
6mer
8657-8676
0.001
1
6mer
12389-12403
0.001
0
6mer
11188-11205
0.001
0
6mer
12645-12666
0.001
Not Conserved
6mer
11498-11517
0.000
1
XLOC_001583
hsa-miR-221-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002713
Biotype: transcript isomorph
Gene id: XLOC_001583
Gene Name: XLOC_001583
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
728-754
0.009
1
6mer
2076-2098
0.008
1
6mer
365-385
0.008
1
CTC-261N6.2
hsa-miR-221-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515706
Biotype: lincRNA
Gene id: ENSG00000250124
Gene Name: CTC-261N6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17-42
0.025
0
RP11-1260E13.4
hsa-miR-221-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570711
Biotype: antisense
Gene id: ENSG00000262061
Gene Name: RP11-1260E13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
884-907
0.019
0
7mer
13-32
0.006
0
RP11-400N13.1
hsa-miR-221-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416510
Biotype: lincRNA
Gene id: ENSG00000236230
Gene Name: RP11-400N13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
36-51
0.025
1
XLOC_001149
hsa-miR-221-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000112
Biotype: transcript isomorph
Gene id: XLOC_001149
Gene Name: XLOC_001149
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
607-630
0.025
1
RP11-576D8.4
hsa-miR-221-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442318
Biotype: lincRNA
Gene id: ENSG00000224717
Gene Name: RP11-576D8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-108
0.023
8
6mer
1368-1387
0.001
1
HOTAIR
hsa-miR-221-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_003716.3
Biotype: lincRNA
Gene id: NR_003716.3 (gene)
Gene Name: HOTAIR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-103
0.025
2
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