LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-221-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
LINC01359
hsa-miR-221-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447748
Biotype: lincRNA
Gene id: ENSG00000226891
Gene Name: LINC01359
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46-61
0.015
1
6mer
2058-2077
0.003
1
6mer
782-801
0.003
1
6mer
451-470
0.002
0
6mer
2567-2586
0.002
0
XLOC_002318
hsa-miR-221-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004444
Biotype: transcript isomorph
Gene id: XLOC_002318
Gene Name: XLOC_002318
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-22
0.026
0
RP11-488I20.8
hsa-miR-221-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562572
Biotype: lincRNA
Gene id: ENSG00000260958
Gene Name: RP11-488I20.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
340-362
0.026
1
FLJ22763
hsa-miR-221-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467240
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1381-1405
0.021
1
6mer
703-719
0.004
3
LINC01235
hsa-miR-221-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000604724
Biotype: lincRNA
Gene id: ENSG00000270547
Gene Name: LINC01235
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
346-367
0.026
0
AC107622.1
hsa-miR-221-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000455626
Biotype: lincRNA
Gene id: ENSG00000231304
Gene Name: AC107622.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-173
0.012
3
6mer
145-162
0.006
2
7mer
1467-1491
0.005
0
6mer
1662-1681
0.003
1
RP11-1035H13.2
hsa-miR-221-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569096
Biotype: antisense
Gene id: ENSG00000260017
Gene Name: RP11-1035H13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
209-226
0.026
6
RP11-468E2.11
hsa-miR-221-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619226
Biotype: sense_intronic
Gene id: ENSG00000278784
Gene Name: RP11-468E2.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
176-184
0.018
1
6mer
229-255
0.008
0
RP5-940J5.6
hsa-miR-221-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501075
Biotype: antisense
Gene id: ENSG00000247853
Gene Name: RP5-940J5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1617-1631
0.026
0
RP11-326A19.3
hsa-miR-221-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000570120
Biotype: antisense
Gene id: ENSG00000261407
Gene Name: RP11-326A19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-187
0.026
1
RP11-752G15.3
hsa-miR-221-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560650
Biotype: antisense
Gene id: ENSG00000259462
Gene Name: RP11-752G15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1792-1813
0.024
1
6mer
620-642
0.001
Not Conserved
RP13-735L24.1
hsa-miR-221-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000567749
Biotype: lincRNA
Gene id: ENSG00000260423
Gene Name: RP13-735L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1151-1168
0.022
3
6mer
1469-1487
0.003
1
RP11-55K13.1
hsa-miR-221-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570148
Biotype: antisense
Gene id: ENSG00000260495
Gene Name: RP11-55K13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
744-766
0.018
1
7mer
2121-2146
0.007
0
AC006262.5
hsa-miR-221-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598518
Biotype: lincRNA
Gene id: ENSG00000268621
Gene Name: AC006262.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
146-159
0.025
0
XLOC_002712
hsa-miR-221-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006100
Biotype: transcript isomorph
Gene id: XLOC_002712
Gene Name: XLOC_002712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-291
0.025
0
LINC01320
hsa-miR-221-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587085
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
233-245
0.025
1
ALKBH3-AS1
hsa-miR-221-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527960
Biotype: antisense
Gene id: ENSG00000244926
Gene Name: ALKBH3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-190
0.025
1
XLOC_007336
hsa-miR-221-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015964
Biotype: transcript isomorph
Gene id: XLOC_007336
Gene Name: XLOC_007336
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-100
0.025
1
HOTAIR
hsa-miR-221-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000424518
Biotype: antisense
Gene id: ENSG00000228630
Gene Name: HOTAIR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-103
0.025
2
MIR133A1HG
hsa-miR-221-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581072
Biotype: antisense
Gene id: ENSG00000265142
Gene Name: MIR133A1HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
222-244
0.025
14
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept