LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-221-3p


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Gene
miRNA
Score
DIANA Links
XLOC_001826
hsa-miR-221-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003088
Biotype: transcript isomorph
Gene id: XLOC_001826
Gene Name: XLOC_001826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-53
0.024
0
6mer
103-127
0.003
0
AC008175.1
hsa-miR-221-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000439653
Biotype: lincRNA
Gene id: ENSG00000235059
Gene Name: AC008175.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
592-615
0.025
Not Conserved
6mer
208-227
0.002
Not Conserved
AC007359.6
hsa-miR-221-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000417910
Biotype: lincRNA
Gene id: ENSG00000236951
Gene Name: AC007359.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
131-154
0.025
Not Conserved
6mer
519-538
0.002
Not Conserved
AC007879.7
hsa-miR-221-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000440326
Biotype: lincRNA
Gene id: ENSG00000229647
Gene Name: AC007879.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-53
0.024
0
6mer
103-127
0.003
0
XLOC_005502
hsa-miR-221-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011988
Biotype: transcript isomorph
Gene id: XLOC_005502
Gene Name: XLOC_005502
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
837-856
0.018
1
7mer
207-230
0.009
0
XLOC_003704
hsa-miR-221-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008261
Biotype: transcript isomorph
Gene id: XLOC_003704
Gene Name: XLOC_003704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1340-1360
0.019
3
7mer
1027-1046
0.008
1
XLOC_008538
hsa-miR-221-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018256
Biotype: transcript isomorph
Gene id: XLOC_008538
Gene Name: XLOC_008538
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1321-1347
0.021
Not Conserved
6mer
1657-1667
0.005
0
BAALCOS
hsa-miR-221-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000436771
Biotype: antisense
Gene id: ENSG00000236939
Gene Name: BAALCOS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-28
0.027
1
XLOC_012707
hsa-miR-221-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026354
Biotype: transcript isomorph
Gene id: XLOC_012707
Gene Name: XLOC_012707
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-463
0.027
0
GPR1-AS
hsa-miR-221-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000623040
Biotype: antisense
Gene id: ENSG00000279220
Gene Name: GPR1-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2714-2735
0.014
0
8mer
405-427
0.010
0
6mer
610-633
0.002
0
LINC01109
hsa-miR-221-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000603837
Biotype: lincRNA
Gene id: ENSG00000271167
Gene Name: LINC01109
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2919-2932
0.023
1
6mer
1869-1894
0.003
0
RP4-621B10.8
hsa-miR-221-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609675
Biotype: lincRNA
Gene id: ENSG00000273487
Gene Name: RP4-621B10.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
133-153
0.024
0
6mer
263-282
0.002
1
RP11-1096G20.5
hsa-miR-221-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580270
Biotype: antisense
Gene id: ENSG00000266368
Gene Name: RP11-1096G20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-217
0.026
0
RP11-544A12.8
hsa-miR-221-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000502188
Biotype: antisense
Gene id: ENSG00000246851
Gene Name: RP11-544A12.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1900-1918
0.023
1
7mer
2210-2232
0.003
1
RP11-423G4.10
hsa-miR-221-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000612818
Biotype: sense_intronic
Gene id: ENSG00000274598
Gene Name: RP11-423G4.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-130
0.026
0
FLJ22763
hsa-miR-221-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_033977.1
Biotype: lincRNA
Gene id: NR_033977.1 (gene)
Gene Name: FLJ22763
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1381-1405
0.022
1
6mer
703-719
0.004
3
RP11-445O3.3
hsa-miR-221-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562127
Biotype: lincRNA
Gene id: ENSG00000260763
Gene Name: RP11-445O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2885-2902
0.020
0
6mer
1746-1760
0.006
0
XLOC_011429
hsa-miR-221-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023629
Biotype: transcript isomorph
Gene id: XLOC_011429
Gene Name: XLOC_011429
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-103
0.012
1
8mer
281-299
0.011
0
6mer
576-598
0.003
1
RP11-102J14.1
hsa-miR-221-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000442389
Biotype: lincRNA
Gene id: ENSG00000230437
Gene Name: RP11-102J14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-70
0.026
Not Conserved
LINC01054
hsa-miR-221-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000446989
Biotype: antisense
Gene id: ENSG00000229723
Gene Name: LINC01054
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
414-428
0.020
1
6mer
299-316
0.006
1
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